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SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00031
Bact-VirSR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00031
Identity
- Kingdom:
- phage
Quality
84.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-81
Domain cluster:
rep: CG_2015-01t_scaffold_23_prodigal-single.1__X__X__00103__D4-75
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3anwA02 | 3.40.5.50 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.69 | 45.0 | 4.99e-01 | 95.9% | 86.2% |
| 2lsmA00 | 3.40.5.70 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › DNA packaging chaperone protein FI, C-terminal beta-strand domain | 0.64 | 42.0 | 4.52e-01 | 93.2% | 82.0% |
| 1jb0D00 | 3.30.1470.10 | Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II | 0.63 | 48.0 | 3.99e-01 | 100.0% | 44.9% |
| 2fqpA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 45.0 | 4.14e-01 | 97.3% | 58.9% |
| 3rnsA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 42.0 | 3.85e-01 | 97.3% | 52.0% |
| 3hqxA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 43.0 | 3.82e-01 | 97.3% | 50.5% |
| 2q30A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 42.0 | 4.02e-01 | 98.6% | 60.2% |
| 3d82A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 41.0 | 3.77e-01 | 98.6% | 51.0% |
| 2oo2A00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.61 | 46.0 | 4.58e-01 | 95.9% | 76.3% |
| 2oyzA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 42.0 | 3.90e-01 | 97.3% | 56.4% |
| 1x8mA01 | 2.60.120.520 | Mainly Beta › Sandwich › Jelly Rolls › pectin degrading enzyme 5-keto 4- deoxyuronate isomerase, domain 1 | 0.61 | 43.0 | 3.67e-01 | 97.3% | 45.1% |
| 3cewA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 42.0 | 3.72e-01 | 98.6% | 49.1% |
| 4mv2A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 41.0 | 3.55e-01 | 97.3% | 44.2% |
| 1v70A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 41.0 | 3.71e-01 | 98.6% | 51.4% |
| 4bs9A01 | 3.90.930.60 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.59 | 51.0 | 4.73e-01 | 97.3% | 86.3% |
| 2i45D00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 40.0 | 3.70e-01 | 98.6% | 53.5% |
| 1qwrA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 38.0 | 3.69e-01 | 97.3% | 56.2% |
| 2o8qA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 40.0 | 3.48e-01 | 98.6% | 44.3% |
| 3es1A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 40.0 | 3.37e-01 | 97.3% | 42.1% |
| 3eo6A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 39.0 | 3.51e-01 | 97.3% | 50.0% |
| 3i7dA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 40.0 | 3.19e-01 | 98.6% | 35.7% |
| 3ht1A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 39.0 | 3.24e-01 | 97.3% | 38.7% |
| 5by5A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 38.0 | 3.35e-01 | 98.6% | 46.1% |
| 3l2hA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 39.0 | 3.17e-01 | 98.6% | 37.4% |
| 4eutB02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.54 | 39.0 | 2.89e-01 | 77.0% | 73.3% |
| 5tk2B00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.53 | 40.0 | 3.83e-01 | 81.1% | 94.3% |
| 1z5hA03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 42.0 | 4.23e-01 | 97.3% | 89.0% |
| 4f2eA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.52 | 40.0 | 3.68e-01 | 83.8% | 84.7% |
| 3okzB00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.52 | 45.0 | 3.02e-01 | 95.9% | 32.5% |
| 1zoqA00 | 2.60.200.10 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.52 | 38.0 | 2.82e-01 | 77.0% | 36.1% |
| 1ltmA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.52 | 43.0 | 3.32e-01 | 93.2% | 79.2% |
| 4wedA02 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.51 | 44.0 | 3.20e-01 | 98.6% | 98.2% |
| 2wolA02 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.51 | 45.0 | 3.16e-01 | 97.3% | 98.7% |
| 5h5oA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 39.0 | 3.32e-01 | 82.4% | 98.4% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 41.0 | 3.81e-01 | 89.2% | 74.2% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3742088 | 4076.3.1.3 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C | 0.68 | 44.0 | 4.95e-01 | 94.6% | 90.7% |
| 4040812 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.64 | 54.0 | 5.14e-01 | 94.6% | 96.6% |
| 3235765 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.63 | 43.0 | 3.99e-01 | 98.6% | 54.7% |
| 3946285 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.62 | 42.0 | 3.29e-01 | 97.3% | 32.5% |
| 4995691 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.62 | 42.0 | 3.81e-01 | 98.6% | 52.0% |
| 164729 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.62 | 42.0 | 3.78e-01 | 98.6% | 50.0% |
| 3348374 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.61 | 42.0 | 3.94e-01 | 97.3% | 57.8% |
| 3943746 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.61 | 41.0 | 3.58e-01 | 98.6% | 43.3% |
| 381831 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.61 | 44.0 | 4.05e-01 | 97.3% | 58.8% |
| 4038262 | 10.12.1.35 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ppnp | 0.61 | 41.0 | 3.75e-01 | 97.3% | 52.5% |
| 1180014 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.61 | 41.0 | 3.60e-01 | 97.3% | 45.6% |
| 4246213 | 10.12.1.35 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ppnp | 0.60 | 41.0 | 3.85e-01 | 97.3% | 55.8% |
| 4988640 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.60 | 41.0 | 3.66e-01 | 97.3% | 48.2% |
| 4092770 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 51.0 | 4.62e-01 | 94.6% | 92.0% |
| 4968151 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.60 | 51.0 | 4.61e-01 | 95.9% | 97.1% |
| 4132202 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.60 | 41.0 | 3.68e-01 | 98.6% | 49.1% |
| 4284515 | 10.12.1.5 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C | 0.59 | 42.0 | 3.81e-01 | 97.3% | 55.0% |
| 4025507 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.59 | 42.0 | 4.27e-01 | 98.6% | 74.7% |
| 4965211 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.59 | 42.0 | 3.68e-01 | 98.6% | 48.7% |
| 3963751 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.59 | 40.0 | 3.62e-01 | 98.6% | 50.5% |
| 2080774 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.58 | 40.0 | 3.46e-01 | 97.3% | 44.9% |
| 169161 | 10.12.1.35 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ppnp | 0.58 | 39.0 | 3.51e-01 | 97.3% | 49.1% |
| 3633929 | 10.12.1.5 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C | 0.58 | 42.0 | 3.62e-01 | 97.3% | 48.3% |
| 3944728 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.57 | 40.0 | 3.45e-01 | 98.6% | 45.0% |
| 3425621 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.57 | 39.0 | 3.21e-01 | 97.3% | 37.9% |
| 374639 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.56 | 39.0 | 3.23e-01 | 97.3% | 38.5% |
| 4995865 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.56 | 40.0 | 3.41e-01 | 97.3% | 44.8% |
| 3257716 | 10.12.1.21 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ERG2_Sigma1R | 0.53 | 40.0 | 3.14e-01 | 85.1% | 74.1% |
| 3613140 | 1189.1.1.0 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor | 0.52 | 43.0 | 2.80e-01 | 98.6% | 86.5% |
| 3285052 | 304.139.1.4 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_CT1975 | 0.51 | 37.0 | 2.46e-01 | 77.0% | 60.7% |
| 3398711 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 38.0 | 3.47e-01 | 81.1% | 71.0% |
| 3757196 | 10.12.1.21 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ERG2_Sigma1R | 0.50 | 38.0 | 2.86e-01 | 85.1% | 65.6% |