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SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00044
Bact-VirSR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00044
Identity
- Kingdom:
- phage
Quality
76.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 818-900
Domain cluster:
representative
D2
medium
residues 63-138_167-201
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2k5nA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.70 | 46.0 | 5.48e-01 | 94.6% | 100.0% |
| 3aqqA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 50.0 | 5.33e-01 | 97.3% | 84.8% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.62 | 27.0 | 3.74e-01 | 91.9% | 82.1% |
| 1wydA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 44.0 | 4.60e-01 | 93.7% | 82.4% |
| 3i7fA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 46.0 | 4.37e-01 | 93.7% | 72.7% |
| 2vnuD01 | 2.40.50.690 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 42.0 | 4.35e-01 | 92.8% | 82.5% |
| 3amuA02 | 2.40.50.1010 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 48.0 | 4.50e-01 | 95.5% | 91.9% |
| 1io1A03 | 2.30.220.10 | Mainly Beta › Roll › f41 fragment of flagellin, C-terminal domain › f41 fragment of flagellin, C-terminal domain | 0.53 | 36.0 | 3.83e-01 | 98.2% | 82.1% |
| 3bdlA02 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 48.0 | 4.26e-01 | 100.0% | 90.9% |
| 4qmgA02 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 47.0 | 4.28e-01 | 100.0% | 92.4% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.70 | 50.0 | 5.67e-01 | 95.5% | 96.5% | |
| 3245885 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 46.0 | 4.57e-01 | 75.7% | 92.2% |
| 3243141 | 2.1.1.270 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RSD-2 | 0.63 | 45.0 | 3.68e-01 | 73.9% | 74.9% |
| 3547083 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.62 | 44.0 | 4.82e-01 | 95.5% | 90.0% |
| 3616998 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 43.0 | 4.55e-01 | 95.5% | 85.3% |
| 3599585 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 50.0 | 5.04e-01 | 93.7% | 88.2% |
| 3578390 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 41.0 | 3.45e-01 | 95.5% | 41.6% |
| 3630124 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.57 | 44.0 | 4.53e-01 | 96.4% | 85.7% |
| 2519670 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.56 | 41.0 | 4.18e-01 | 93.7% | 78.9% |
| 3609625 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.54 | 50.0 | 4.19e-01 | 100.0% | 79.4% |
| 3642805 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 34.0 | 2.43e-01 | 100.0% | 20.0% |
| 3514893 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.51 | 47.0 | 4.08e-01 | 100.0% | 85.5% |
| 3869355 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.51 | 45.0 | 4.14e-01 | 99.1% | 75.7% |
| 3337007 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.51 | 47.0 | 3.89e-01 | 100.0% | 84.2% |
| 3627734 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.51 | 46.0 | 4.20e-01 | 100.0% | 92.7% |
| 3582420 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.50 | 46.0 | 3.98e-01 | 100.0% | 81.8% |
D3
medium
residues 237-257_313-335_347-364
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rbyA02 | 2.40.128.310 | Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain | 0.54 | 38.0 | 3.40e-01 | 75.8% | 64.2% |
| 4gr4C02 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.54 | 43.0 | 2.79e-01 | 100.0% | 79.2% |
| 4hbrA00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 45.0 | 3.57e-01 | 100.0% | 79.3% |
| 3eafA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 42.0 | 3.13e-01 | 96.8% | 76.8% |
| 4fr9A00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 42.0 | 3.39e-01 | 100.0% | 79.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3715243 | 77.2.1.0 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N | 0.67 | 58.0 | 4.60e-01 | 98.4% | 62.3% |
| 3706670 | 292.2.1.6 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › DUF4520 | 0.65 | 51.0 | 4.27e-01 | 87.1% | 53.6% |
| 3175463 | 7026.1.1.5 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD | 0.60 | 51.0 | 3.54e-01 | 95.2% | 78.6% |
| 3932040 | 79.1.1.18 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 | 0.58 | 43.0 | 3.95e-01 | 79.0% | 66.3% |
| 3192570 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.55 | 43.0 | 2.75e-01 | 90.3% | 47.1% |
| 4025365 | 220.1.1.74 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H | 0.54 | 42.0 | 3.54e-01 | 85.5% | 72.7% |
| 3590950 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.54 | 47.0 | 3.52e-01 | 98.4% | 49.0% |
| 5055131 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.52 | 43.0 | 3.34e-01 | 100.0% | 74.5% |
| 3947082 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 37.0 | 3.29e-01 | 75.8% | 81.1% |
D4
medium
residues 258-312_336-346
Domain cluster:
representative
D5
medium
residues 365-539
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pqhA01 | 2.20.220.20 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › | 0.88 | 22.0 | 4.19e-01 | 99.4% | 71.7% |