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SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00050
Bact-VirSR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00050
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 53-165
Domain cluster:
rep: OR067833.1__WLW40847.1__GNAINCEL_00065__00065__D15-110
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d37B01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.84 | 57.0 | 4.85e-01 | 100.0% | 45.4% |
| 1wruA01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.80 | 59.0 | 5.00e-01 | 97.3% | 49.1% |
| 2p5zX01 | 2.30.110.50 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.76 | 55.0 | 4.80e-01 | 94.7% | 51.2% |
| 3cddA01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.73 | 58.0 | 4.87e-01 | 100.0% | 51.1% |
| 3f6gA01 | 3.30.160.740 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.72 | 26.0 | 3.57e-01 | 98.2% | 63.8% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 31.0 | 3.94e-01 | 97.3% | 72.7% |
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.66 | 47.0 | 5.10e-01 | 98.2% | 87.4% |
| 2gysA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 39.0 | 4.45e-01 | 98.2% | 77.9% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 30.0 | 3.87e-01 | 97.3% | 77.8% |
| 3he1A00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.64 | 58.0 | 5.33e-01 | 100.0% | 86.4% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 29.0 | 3.80e-01 | 97.3% | 77.4% |
| 4w64B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.63 | 57.0 | 5.07e-01 | 100.0% | 81.9% |
| 3ibwA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.63 | 33.0 | 3.83e-01 | 82.3% | 70.9% |
| 3mdyA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 38.0 | 3.84e-01 | 96.5% | 64.5% |
| 6f2mA01 | 3.30.200.190 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.60 | 48.0 | 5.13e-01 | 92.0% | 99.0% |
| 3mwbB03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 34.0 | 3.66e-01 | 88.5% | 65.3% |
| 1t7vA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 34.0 | 3.74e-01 | 86.7% | 70.0% |
| 2bn4B03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 36.0 | 3.23e-01 | 90.3% | 43.7% |
| 3q0bX00 | 2.30.280.10 | Mainly Beta › Roll › PUA domain-like › SRA-YDG | 0.58 | 52.0 | 4.77e-01 | 99.1% | 82.4% |
| 3tmaA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 34.0 | 2.96e-01 | 100.0% | 37.3% |
| 6c98A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 33.0 | 3.67e-01 | 86.7% | 69.2% |
| 2v9kA04 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 36.0 | 3.65e-01 | 79.6% | 63.3% |
| 1y5oA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 35.0 | 3.49e-01 | 99.1% | 60.0% |
| 2w1jA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.56 | 51.0 | 4.25e-01 | 100.0% | 71.8% |
| 2pb7A01 | 2.30.280.10 | Mainly Beta › Roll › PUA domain-like › SRA-YDG | 0.56 | 50.0 | 4.30e-01 | 99.1% | 79.1% |
| 1twfB07 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.55 | 43.0 | 4.23e-01 | 83.2% | 91.9% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.55 | 41.0 | 4.01e-01 | 92.0% | 72.0% |
| 1c16A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 32.0 | 3.45e-01 | 86.7% | 67.0% |
| 2pmzB07 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.54 | 42.0 | 4.11e-01 | 83.2% | 91.9% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 29.0 | 3.05e-01 | 94.7% | 57.3% |
| 3gnlA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 32.0 | 2.79e-01 | 100.0% | 39.4% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 31.0 | 3.54e-01 | 87.6% | 80.5% |
| 3butA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 38.0 | 3.72e-01 | 84.1% | 69.6% |
| 7o0eA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 36.0 | 4.16e-01 | 96.5% | 100.0% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3604610 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.90 | 51.0 | 6.70e-01 | 84.1% | 98.5% |
| 4988103 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.81 | 66.0 | 7.13e-01 | 100.0% | 100.0% |
| 184486 | 1.1.13.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st | 0.81 | 57.0 | 6.63e-01 | 100.0% | 100.0% |
| 184471 | 1.1.13.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st | 0.80 | 59.0 | 6.67e-01 | 97.3% | 100.0% |
| 2475124 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.79 | 63.0 | 6.86e-01 | 95.6% | 100.0% |
| 3972305 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.78 | 60.0 | 6.72e-01 | 99.1% | 100.0% |
| 3966429 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.78 | 60.0 | 6.71e-01 | 99.1% | 100.0% |
| 4809346 | 1.1.13.57 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 | 0.77 | 56.0 | 6.39e-01 | 88.5% | 98.8% |
| 3968713 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.76 | 59.0 | 6.51e-01 | 100.0% | 100.0% |
| 4031285 | 1.1.13.64 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › TT1_Tal | 0.76 | 57.0 | 6.25e-01 | 96.5% | 97.8% |
| 4889788 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.75 | 62.0 | 6.63e-01 | 99.1% | 100.0% |
| 2468519 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.75 | 64.0 | 6.76e-01 | 99.1% | 100.0% |
| 4810019 | 1.1.13.57 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 | 0.73 | 62.0 | 6.30e-01 | 99.1% | 91.8% |
| 3948350 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.72 | 60.0 | 6.33e-01 | 95.6% | 98.0% |
| 5002750 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.70 | 61.0 | 6.36e-01 | 99.1% | 100.0% |
| 4086925 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.69 | 32.0 | 4.08e-01 | 97.3% | 73.8% |
| 3059162 | 1.1.13.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 | 0.68 | 64.0 | 6.17e-01 | 100.0% | 96.8% |
| 3603127 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.68 | 52.0 | 5.69e-01 | 99.1% | 100.0% |
| 5079559 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.68 | 61.0 | 6.12e-01 | 100.0% | 96.5% |
| 3941988 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.67 | 62.0 | 6.25e-01 | 100.0% | 98.3% |
| 142633 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.67 | 31.0 | 3.94e-01 | 97.3% | 72.7% |
| 4146937 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.67 | 31.0 | 3.92e-01 | 97.3% | 73.8% |
| 4524363 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.66 | 31.0 | 3.90e-01 | 97.3% | 73.8% |
| 2387782 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.66 | 61.0 | 5.26e-01 | 100.0% | 79.2% |
| 3959431 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.65 | 45.0 | 4.77e-01 | 84.1% | 80.6% |
| 4646632 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.65 | 30.0 | 3.85e-01 | 97.3% | 73.8% |
| 4038269 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.65 | 30.0 | 3.84e-01 | 97.3% | 73.8% |
| 4201878 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.65 | 30.0 | 3.79e-01 | 97.3% | 73.8% |
| 4009489 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.64 | 58.0 | 5.25e-01 | 100.0% | 85.2% |
| 3969384 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.64 | 59.0 | 5.22e-01 | 100.0% | 82.5% |
| 3977123 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.64 | 58.0 | 5.17e-01 | 100.0% | 80.0% |
| 3435075 | 1.1.9.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA | 0.63 | 57.0 | 4.58e-01 | 98.2% | 63.7% |
| 3950208 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.63 | 29.0 | 3.70e-01 | 97.3% | 73.8% |
| 5067380 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.63 | 56.0 | 5.24e-01 | 97.3% | 86.4% |
| 3608236 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.63 | 29.0 | 3.75e-01 | 96.5% | 75.4% |
| 3306779 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.63 | 29.0 | 3.71e-01 | 97.3% | 73.8% |
| 2832216 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.63 | 57.0 | 5.17e-01 | 100.0% | 90.2% |
| 4051625 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.63 | 29.0 | 3.69e-01 | 97.3% | 72.3% |
| 4037383 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.63 | 29.0 | 3.67e-01 | 97.3% | 72.3% |
| 3654292 | 1.1.9.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA | 0.62 | 55.0 | 4.33e-01 | 99.1% | 56.8% |
| 3599172 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 29.0 | 3.65e-01 | 97.3% | 73.8% |
| 4419948 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.62 | 29.0 | 3.61e-01 | 97.3% | 72.3% |
| 4482805 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.61 | 54.0 | 4.49e-01 | 96.5% | 65.1% |
| 4345080 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.60 | 28.0 | 3.54e-01 | 97.3% | 73.8% |
| 4284764 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.60 | 29.0 | 3.54e-01 | 97.3% | 72.3% |
| 4104219 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.60 | 29.0 | 3.57e-01 | 97.3% | 73.8% |
| 4028885 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.59 | 28.0 | 3.47e-01 | 97.3% | 72.3% |
| 3639132 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.59 | 52.0 | 4.61e-01 | 97.3% | 81.2% |
| 4976162 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.55 | 40.0 | 3.91e-01 | 75.2% | 97.5% |
| 3556801 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.55 | 41.0 | 3.96e-01 | 77.9% | 96.0% |
| 4946076 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.54 | 40.0 | 3.93e-01 | 77.9% | 97.6% |
| 5003311 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.54 | 48.0 | 4.95e-01 | 100.0% | 99.1% |
| 4682340 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.54 | 40.0 | 3.93e-01 | 77.9% | 96.8% |
| 4638008 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.54 | 40.0 | 3.99e-01 | 77.9% | 96.7% |
| 4040055 | 4.26.1.1 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 | 0.53 | 26.0 | 3.39e-01 | 97.3% | 87.9% |
| 4024673 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.53 | 38.0 | 3.90e-01 | 75.2% | 99.1% |
D2
high
residues 169-244_260-348
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gr5A01 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.77 | 37.0 | 5.07e-01 | 100.0% | 89.4% |
| 4g08A01 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.71 | 33.0 | 4.82e-01 | 96.4% | 100.0% |
| 4m0nA02 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.71 | 34.0 | 4.84e-01 | 96.4% | 97.4% |
| 7pmpA01 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.70 | 33.0 | 4.79e-01 | 95.2% | 100.0% |
| 2a02A01 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.67 | 33.0 | 4.55e-01 | 98.8% | 100.0% |
| 3ov5A00 | 3.55.50.70 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.62 | 31.0 | 4.16e-01 | 97.6% | 92.9% |
| 2iu5B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 35.0 | 3.50e-01 | 92.1% | 53.7% |
| 3d7iB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.54 | 30.0 | 3.71e-01 | 93.9% | 88.8% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4087530 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.73 | 35.0 | 5.01e-01 | 100.0% | 100.0% |
| 3163777 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.72 | 33.0 | 4.62e-01 | 97.0% | 88.7% |
| 4339226 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.70 | 36.0 | 4.83e-01 | 100.0% | 95.3% |
| 1108144 | 3070.1.1.7 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › FecR_C | 0.68 | 35.0 | 4.75e-01 | 87.3% | 96.4% |
| 3587747 | 3355.1.1.16 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DcuC | 0.54 | 45.0 | 3.27e-01 | 89.7% | 84.8% |
D3
high
residues 360-375_492-590
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d37B01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.74 | 53.0 | 4.52e-01 | 83.5% | 48.9% |
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.72 | 55.0 | 6.06e-01 | 82.6% | 95.8% |
| 1y12B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.70 | 55.0 | 4.92e-01 | 82.6% | 95.5% |
| 3bpkA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.68 | 49.0 | 4.22e-01 | 75.7% | 73.2% |
| 4f0qD01 | 2.30.280.20 | Mainly Beta › Roll › PUA domain-like › | 0.65 | 55.0 | 4.22e-01 | 89.6% | 65.1% |
| 2wzpP01 | 2.40.30.210 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.65 | 47.0 | 4.81e-01 | 73.9% | 92.7% |
| 3fgeA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.65 | 47.0 | 4.10e-01 | 75.7% | 72.7% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.64 | 47.0 | 4.60e-01 | 76.5% | 71.0% |
| 3q0bX00 | 2.30.280.10 | Mainly Beta › Roll › PUA domain-like › SRA-YDG | 0.63 | 47.0 | 4.29e-01 | 77.4% | 66.9% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 45.0 | 4.20e-01 | 75.7% | 78.9% |
| 2q9kA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 45.0 | 4.16e-01 | 75.7% | 61.2% |
| 1t7vA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 37.0 | 4.12e-01 | 70.4% | 80.0% |
| 8ediA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 38.0 | 3.95e-01 | 74.8% | 72.1% |
| 1xdzA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 37.0 | 2.93e-01 | 76.5% | 31.1% |
| 1dr9A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 37.0 | 4.08e-01 | 92.2% | 81.1% |
| 3lnnA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.56 | 43.0 | 4.74e-01 | 96.5% | 100.0% |
| 3fppA01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.56 | 43.0 | 4.50e-01 | 96.5% | 88.5% |
| 4kktA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.56 | 44.0 | 4.64e-01 | 96.5% | 93.3% |
| 1qzzA03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 35.0 | 3.09e-01 | 79.1% | 45.0% |
| 3o3uN03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 37.0 | 3.83e-01 | 78.3% | 73.9% |
| 3g88A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 35.0 | 2.80e-01 | 76.5% | 31.4% |
| 1vm0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.52 | 35.0 | 3.92e-01 | 76.5% | 86.0% |
| 3g2fA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 33.0 | 3.72e-01 | 71.3% | 83.9% |
| 2f8xC03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 35.0 | 3.81e-01 | 97.4% | 84.0% |
| 1y0hB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 31.0 | 3.42e-01 | 81.7% | 72.4% |
| 5f2kB02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 34.0 | 2.81e-01 | 71.3% | 36.9% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.50 | 32.0 | 3.69e-01 | 79.1% | 87.2% |
| 3ofkA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 33.0 | 2.74e-01 | 79.1% | 37.7% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4957568 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.82 | 57.0 | 6.60e-01 | 81.7% | 95.3% |
| 4995816 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.75 | 56.0 | 6.13e-01 | 77.4% | 96.8% |
| 4157825 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.73 | 54.0 | 5.15e-01 | 75.7% | 92.3% |
| 5082881 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.72 | 52.0 | 5.12e-01 | 75.7% | 95.2% |
| 3598686 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.70 | 52.0 | 4.87e-01 | 75.7% | 88.9% |
| 3696371 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.69 | 50.0 | 4.00e-01 | 75.7% | 60.1% |
| 3909822 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 50.0 | 5.10e-01 | 73.9% | 87.3% |
| 4094235 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.67 | 49.0 | 4.80e-01 | 76.5% | 69.6% |
| 4319057 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.67 | 47.0 | 4.76e-01 | 76.5% | 73.0% |
| 4650190 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.67 | 51.0 | 3.91e-01 | 80.9% | 47.7% |
| 2137681 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.67 | 45.0 | 4.68e-01 | 75.7% | 73.4% |
| 4968263 | 1.1.5.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_C | 0.66 | 48.0 | 3.87e-01 | 75.7% | 61.4% |
| 4551243 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.66 | 48.0 | 4.71e-01 | 75.7% | 69.6% |
| 3602499 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.66 | 48.0 | 4.65e-01 | 75.7% | 85.4% |
| 4402697 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.66 | 48.0 | 4.80e-01 | 77.4% | 73.3% |
| 3369437 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.65 | 50.0 | 3.86e-01 | 80.9% | 44.8% |
| 4217523 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.65 | 47.0 | 4.59e-01 | 76.5% | 69.6% |
| 4214302 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.64 | 49.0 | 3.98e-01 | 81.7% | 65.0% |
| 5038876 | 1.1.13.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach | 0.63 | 44.0 | 4.89e-01 | 70.4% | 95.6% |
| 4036849 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.63 | 47.0 | 4.50e-01 | 77.4% | 69.9% |
| 4562905 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.63 | 46.0 | 4.53e-01 | 76.5% | 72.0% |
| 4482805 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.63 | 46.0 | 3.85e-01 | 75.7% | 65.1% |
| 4538400 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.63 | 46.0 | 4.46e-01 | 76.5% | 71.5% |
| 5007131 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.62 | 48.0 | 5.26e-01 | 94.8% | 98.9% |
| 4023048 | 1.1.9.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA | 0.62 | 45.0 | 3.78e-01 | 76.5% | 55.5% |
| 5024463 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.62 | 45.0 | 3.90e-01 | 76.5% | 67.4% |
| 3187986 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.61 | 40.0 | 4.21e-01 | 82.6% | 73.3% |
| 169881 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.60 | 44.0 | 3.67e-01 | 76.5% | 65.2% |
| 3164699 | 1.1.13.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N | 0.60 | 47.0 | 4.73e-01 | 82.6% | 94.8% |
| 3447797 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.59 | 42.0 | 3.81e-01 | 73.0% | 84.0% |
| 4493150 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.59 | 45.0 | 3.61e-01 | 81.7% | 47.8% |
| 4565791 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.59 | 44.0 | 4.86e-01 | 99.1% | 100.0% |
| 3965956 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.58 | 42.0 | 4.72e-01 | 93.9% | 96.7% |
| 3472671 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.58 | 44.0 | 3.44e-01 | 81.7% | 43.1% |
| 3936663 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 51.0 | 4.95e-01 | 94.8% | 98.4% |
| 4663234 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 42.0 | 4.72e-01 | 94.8% | 100.0% |
| 3973696 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 45.0 | 4.41e-01 | 95.7% | 80.8% |
| 4048581 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.55 | 42.0 | 3.36e-01 | 81.7% | 44.9% |
| 3973282 | 1.1.7.89 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 | 0.55 | 47.0 | 4.80e-01 | 96.5% | 97.3% |
| 3546177 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.54 | 39.0 | 3.05e-01 | 73.0% | 36.2% |
| 4372074 | 1.1.7.89 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 | 0.54 | 45.0 | 4.21e-01 | 96.5% | 73.6% |
| 3817267 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.54 | 37.0 | 4.05e-01 | 73.0% | 85.3% |
| 3825958 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.53 | 38.0 | 3.29e-01 | 90.4% | 46.7% |
| 3508519 | 271.1.1.5 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › G2F | 0.52 | 39.0 | 3.18e-01 | 79.1% | 75.5% |
| 3932700 | 271.1.1.5 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › G2F | 0.51 | 41.0 | 3.32e-01 | 87.8% | 97.8% |
D4
medium
residues 378-435_475-491
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cddB03 | 3.30.1920.10 | Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › Baseplate protein-like domains - 2 layer sandwich fold | 0.74 | 52.0 | 5.75e-01 | 100.0% | 93.2% |
| 1wruA03 | 3.30.1920.10 | Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › Baseplate protein-like domains - 2 layer sandwich fold | 0.72 | 50.0 | 5.58e-01 | 100.0% | 96.4% |
| 3d37A03 | 3.30.1920.10 | Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › Baseplate protein-like domains - 2 layer sandwich fold | 0.64 | 46.0 | 4.99e-01 | 100.0% | 96.7% |
| 3tmpA01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.59 | 40.0 | 3.21e-01 | 70.7% | 68.0% |
| 5fbhA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 43.0 | 3.03e-01 | 98.7% | 86.0% |
| 5dudC02 | 2.40.100.10 | Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like | 0.51 | 38.0 | 3.20e-01 | 80.0% | 90.5% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 119096 | 3071.1.1.0 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins | 0.71 | 50.0 | 5.62e-01 | 100.0% | 98.2% |
| 3971145 | 3071.1.1.1 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › Phage_GPD | 0.66 | 50.0 | 5.49e-01 | 94.7% | 100.0% |
| 223697 | 3071.1.1.5 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › Gp44-like_3rd | 0.64 | 46.0 | 5.01e-01 | 100.0% | 98.3% |
| 5030077 | 7516.1.1.11 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CTP_transf_3 | 0.55 | 47.0 | 3.36e-01 | 97.3% | 42.2% |