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SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00084
Bact-VirSR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00084
Identity
- Kingdom:
- phage
Quality
94.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-62
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nbuA00 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.55 | 46.0 | 3.72e-01 | 100.0% | 71.2% |
| 2i9uA01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.54 | 38.0 | 3.11e-01 | 85.7% | 38.7% |
| 2o1bA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 42.0 | 3.15e-01 | 91.1% | 61.3% |
| 1iq0A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.50 | 42.0 | 2.62e-01 | 100.0% | 31.7% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3954708 | 4325.1.1.9 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF26003 | 0.83 | 62.0 | 6.55e-01 | 100.0% | 90.0% |
| 3247166 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.77 | 49.0 | 4.44e-01 | 89.3% | 49.3% |
| 4961482 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.75 | 68.0 | 6.69e-01 | 100.0% | 91.7% |
| 3918404 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.73 | 64.0 | 5.69e-01 | 100.0% | 71.2% |
| 3492229 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.67 | 59.0 | 4.95e-01 | 100.0% | 58.9% |
| 3663237 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.66 | 58.0 | 5.18e-01 | 100.0% | 72.5% |
| 3833590 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.64 | 38.0 | 4.16e-01 | 78.6% | 73.3% |
| 3957641 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.62 | 51.0 | 5.17e-01 | 100.0% | 96.4% |
| 3971048 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.59 | 44.0 | 4.11e-01 | 80.4% | 92.9% |
| 3817114 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.57 | 37.0 | 3.93e-01 | 89.3% | 76.0% |
| 3682355 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 34.0 | 3.49e-01 | 71.4% | 67.3% |
| 5013787 | 2005.1.1.124 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › DALR_1 | 0.53 | 39.0 | 2.24e-01 | 80.4% | 14.4% |
| 2106264 | 3209.1.1.1 ↗ | a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e | 0.53 | 42.0 | 3.45e-01 | 94.6% | 44.2% |
| 4995760 | 4023.1.1.0 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core | 0.53 | 35.0 | 3.29e-01 | 83.9% | 53.3% |
| 4947329 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.51 | 42.0 | 2.74e-01 | 100.0% | 35.9% |
| 4933668 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.51 | 43.0 | 2.75e-01 | 100.0% | 35.5% |