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SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00085
Bact-VirSR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00085
Identity
- Kingdom:
- phage
Quality
82.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-79
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w35A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.62 | 43.0 | 3.16e-01 | 92.3% | 25.6% |
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.60 | 45.0 | 4.57e-01 | 78.2% | 88.0% |
| 4fczA00 | 3.10.450.710 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC | 0.60 | 48.0 | 3.71e-01 | 88.5% | 93.4% |
| 4l9cA00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.58 | 43.0 | 3.48e-01 | 78.2% | 54.0% |
| 1gyvA00 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.58 | 42.0 | 3.68e-01 | 78.2% | 76.7% |
| 2kf2A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 39.0 | 3.04e-01 | 70.5% | 91.6% |
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.57 | 39.0 | 3.03e-01 | 71.8% | 36.3% |
| 4nehA01 | 2.130.10.130 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal | 0.57 | 47.0 | 3.08e-01 | 94.9% | 24.6% |
| 1fcqA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 39.0 | 2.57e-01 | 70.5% | 82.8% |
| 4okeA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 38.0 | 3.09e-01 | 74.4% | 98.8% |
| 7rpyA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 47.0 | 4.34e-01 | 97.4% | 97.1% |
| 3i2nA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 44.0 | 2.87e-01 | 94.9% | 20.3% |
| 4evxA00 | 1.10.1740.240 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.54 | 47.0 | 4.37e-01 | 97.4% | 94.8% |
| 1vq8N00 | 3.30.420.100 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.53 | 44.0 | 3.48e-01 | 97.4% | 61.8% |
| 3q8dA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 39.0 | 3.94e-01 | 100.0% | 79.2% |
| 1jmxB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 43.0 | 2.85e-01 | 94.9% | 21.2% |
| 4fpwB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 39.0 | 3.20e-01 | 83.3% | 83.2% |
| 1dzkA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 36.0 | 2.99e-01 | 73.1% | 50.0% |
| 4oddA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 36.0 | 3.01e-01 | 74.4% | 51.0% |
| 1vhzA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.51 | 36.0 | 2.76e-01 | 73.1% | 57.9% |
| 1pbyB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 43.0 | 2.85e-01 | 94.9% | 24.6% |
| 8oqxA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 34.0 | 3.03e-01 | 83.3% | 45.6% |
| 3dcdA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.50 | 41.0 | 2.89e-01 | 94.9% | 71.6% |
| 3kf8B00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 38.0 | 3.42e-01 | 94.9% | 55.0% |
| 4ufcA01 | 2.70.98.50 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans | 0.50 | 42.0 | 2.89e-01 | 100.0% | 28.4% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4439294 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.72 | 52.0 | 4.40e-01 | 75.6% | 48.8% |
| 4011588 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.71 | 48.0 | 4.92e-01 | 75.6% | 73.3% |
| 3946465 | 5.1.4.68 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WG_beta_rep | 0.71 | 40.0 | 2.48e-01 | 100.0% | 10.4% |
| 3235447 | 821.1.1.8 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › ANKLE2_3rd | 0.71 | 55.0 | 5.32e-01 | 85.9% | 98.9% |
| 3313861 | 4325.1.1.10 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF659 | 0.70 | 46.0 | 5.33e-01 | 80.8% | 96.4% |
| 3578019 | 821.1.1.8 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › ANKLE2_3rd | 0.67 | 54.0 | 4.93e-01 | 89.7% | 98.1% |
| 4957188 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.64 | 38.0 | 3.36e-01 | 100.0% | 40.0% |
| 3632113 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.64 | 46.0 | 4.04e-01 | 75.6% | 82.6% |
| 3669022 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.63 | 43.0 | 4.07e-01 | 75.6% | 57.9% |
| 3624434 | 821.1.1.8 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › ANKLE2_3rd | 0.63 | 52.0 | 3.98e-01 | 92.3% | 54.6% |
| 5057564 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.63 | 45.0 | 3.54e-01 | 75.6% | 61.9% |
| 3738128 | 844.1.1.4 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase | 0.62 | 41.0 | 3.04e-01 | 94.9% | 27.9% |
| 4596146 | 243.1.1.104 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Imm-NTF2 | 0.61 | 36.0 | 3.10e-01 | 100.0% | 35.4% |
| 3723546 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.60 | 51.0 | 3.36e-01 | 94.9% | 23.6% |
| 3864913 | 218.1.1.2 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N | 0.59 | 47.0 | 3.81e-01 | 88.5% | 89.7% |
| 5040009 | 5.1.3.22 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH | 0.59 | 50.0 | 3.28e-01 | 94.9% | 28.4% |
| 4026643 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 43.0 | 4.25e-01 | 93.6% | 74.1% |
| 4144742 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.56 | 51.0 | 4.41e-01 | 100.0% | 94.2% |
| 4966333 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.55 | 31.0 | 3.36e-01 | 100.0% | 63.1% |
| 3980680 | 3308.2.1.2 ↗ | beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein › PF27031 | 0.55 | 42.0 | 3.29e-01 | 83.3% | 48.8% |
| 4435043 | 2484.1.1.178 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA | 0.55 | 41.0 | 2.66e-01 | 82.1% | 97.4% |
| 5038058 | 2484.1.1.75 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L5e | 0.54 | 46.0 | 3.84e-01 | 93.6% | 97.0% |
| 5074458 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.54 | 47.0 | 3.72e-01 | 100.0% | 94.7% |
| 4927674 | 814.1.1.0 ↗ | a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase | 0.54 | 47.0 | 3.90e-01 | 100.0% | 66.7% |
| 4013509 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 38.0 | 2.83e-01 | 100.0% | 29.0% |
| 4944090 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 41.0 | 3.65e-01 | 96.2% | 59.1% |
| 3893078 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.51 | 43.0 | 3.18e-01 | 96.2% | 95.6% |
| 4990017 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.51 | 35.0 | 2.73e-01 | 100.0% | 32.9% |
| 3536545 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.51 | 36.0 | 2.96e-01 | 75.6% | 69.0% |
| 4543805 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.50 | 41.0 | 3.52e-01 | 91.0% | 95.3% |
| 4940380 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.50 | 44.0 | 3.15e-01 | 96.2% | 67.7% |