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SR-VP_0-2_scaffold_141_2072294_prodigal-single.1XX__00102

Bact-Vir

SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00102

Identity

Kingdom:: phage

Quality

83.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-115

PDB

Domain cluster: rep: BML_coassembly_scaffold_50_prodigal-single.1__X__X__00226__D10-103

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3o4zA02	1.25.40.720	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tel2 C-terminal domain	0.59	45.0	3.70e-01	98.2%	44.8%
2ggfA00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.59	47.0	4.38e-01	97.2%	67.9%
2cobA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.56	26.0	3.53e-01	77.1%	100.0%
2nrlA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.55	43.0	3.95e-01	85.3%	91.7%
2rkkA01	1.25.40.270	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1	0.51	39.0	3.52e-01	82.6%	87.8%
2c0kB00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.51	42.0	3.88e-01	93.6%	71.1%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3576168	109.4.1.390 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TH1	0.61	44.0	3.60e-01	76.1%	43.4%
3933426	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.59	44.0	4.71e-01	96.3%	89.5%
3789215	109.4.1.160 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3384	0.59	42.0	3.69e-01	74.3%	83.6%
4675723	3290.1.1.1 ↗	alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › FeoB_Cyto	0.54	37.0	3.88e-01	85.3%	76.0%
3230343	109.54.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12	0.54	40.0	3.84e-01	94.5%	68.0%
3792413	150.1.1.89 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › TRAM_LAG1_CLN8	0.53	45.0	3.58e-01	93.6%	74.8%
3722615	3924.1.1.0 ↗	alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2	0.53	40.0	3.47e-01	82.6%	93.5%
3724534	3924.1.1.1 ↗	alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Fungal_trans_2	0.53	45.0	3.30e-01	96.3%	77.3%
3259815	4156.1.1.1 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63	0.51	38.0	3.77e-01	92.7%	71.7%
60141	109.8.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Arp2/3 complex 16 KDa subunit ARPC5 › Arp2/3 complex 16 KDa subunit ARPC5	0.51	41.0	4.03e-01	96.3%	80.2%
3991109	633.21.1.0 ↗	alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107	0.50	38.0	3.49e-01	79.8%	70.0%

D2 high residues 292-371

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1tk1A00	3.40.1500.10	Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic	0.62	47.0	3.50e-01	83.7%	84.9%
3axbA01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.53	41.0	2.99e-01	86.3%	77.0%
8bauA01	1.10.357.40	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like	0.51	42.0	3.34e-01	96.2%	86.2%
1sjyA00	3.90.79.10	Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase	0.51	38.0	3.12e-01	81.2%	87.0%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4082618	102.1.1.9 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD	0.57	40.0	4.18e-01	73.8%	85.3%
5001587	2004.1.1.76 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87	0.53	37.0	2.42e-01	72.5%	16.5%
3186671	109.3.1.8 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2	0.53	36.0	2.66e-01	71.2%	66.8%
4985036	101.1.2.31 ↗	alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha	0.53	36.0	2.88e-01	72.5%	40.6%
5047548	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	41.0	4.03e-01	88.7%	97.8%
3212145	633.22.1.0 ↗	alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR)	0.52	38.0	2.90e-01	77.5%	82.6%
3972372	4308.1.1.0 ↗	a+b complex topology › YbiA-like › YbiA-like › YbiA-like	0.51	43.0	3.43e-01	98.8%	79.9%
3279758	4308.1.1.1 ↗	a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR	0.50	42.0	3.56e-01	98.8%	81.9%
3797441	4308.1.1.0 ↗	a+b complex topology › YbiA-like › YbiA-like › YbiA-like	0.50	42.0	3.53e-01	100.0%	78.4%

D3 medium residues 129-289

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4kwaB00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.51	36.0	3.46e-01	72.7%	76.0%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3718737	633.33.1.0 ↗	alpha bundles › Bromodomain-like › Rogdi › Rogdi	0.60	50.0	4.03e-01	88.2%	92.3%
5049932	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.50	30.0	3.18e-01	95.7%	65.0%