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SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00126
Bact-VirSR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00126
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 56-146
Domain cluster:
rep: IMGVR_UViG_3300025623_000332-3300025623-Ga0209041_10082295__D4-91
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w5eA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 34.0 | 3.72e-01 | 72.5% | 64.9% |
| 1azpA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 35.0 | 3.97e-01 | 75.8% | 75.8% |
| 4g29A00 | 3.10.670.10 | Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. | 0.60 | 52.0 | 4.25e-01 | 94.5% | 54.2% |
| 1ukfA00 | 3.90.70.20 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.58 | 41.0 | 3.25e-01 | 73.6% | 38.8% |
| 2wdtC02 | 3.30.1490.420 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 | 0.58 | 41.0 | 4.02e-01 | 74.7% | 81.2% |
| 2w7qB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.57 | 40.0 | 3.26e-01 | 72.5% | 82.2% |
| 2fblB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.57 | 47.0 | 4.13e-01 | 94.5% | 87.2% |
| 4l2iB00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 42.0 | 3.04e-01 | 83.5% | 66.2% |
| 4ebrA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.53 | 37.0 | 3.07e-01 | 71.4% | 73.9% |
| 1efpB00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 41.0 | 3.02e-01 | 83.5% | 72.0% |
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 31.0 | 3.77e-01 | 91.2% | 96.5% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3867672 | 2.1.1.22 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HIN | 0.63 | 28.0 | 3.20e-01 | 74.7% | 54.4% |
| 3731305 | 219.1.1.93 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 | 0.60 | 50.0 | 4.56e-01 | 92.3% | 98.4% |
| 4025925 | 219.1.1.37 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C97 | 0.60 | 53.0 | 4.78e-01 | 98.9% | 100.0% |
| 3387958 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.57 | 48.0 | 4.10e-01 | 94.5% | 81.9% |
| 2532980 | 219.1.1.53 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Vasohibin | 0.56 | 47.0 | 3.44e-01 | 91.2% | 36.2% |
| 5015520 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.56 | 39.0 | 2.99e-01 | 71.4% | 87.6% |
| 3602499 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.54 | 37.0 | 3.33e-01 | 96.7% | 50.0% |
| 3633728 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.53 | 41.0 | 3.86e-01 | 83.5% | 97.4% |
| 3529648 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.53 | 37.0 | 3.23e-01 | 71.4% | 78.6% |
| 3635615 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 41.0 | 3.35e-01 | 86.8% | 80.5% |
| 3386839 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.52 | 40.0 | 3.41e-01 | 83.5% | 84.3% |
| 3257454 | 220.1.1.12 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 | 0.52 | 44.0 | 3.43e-01 | 94.5% | 65.9% |
| 3507419 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.52 | 36.0 | 2.89e-01 | 72.5% | 76.8% |
| 3531579 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.51 | 35.0 | 3.01e-01 | 70.3% | 76.1% |