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SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00139

Bact-Vir

SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00139

Identity

Kingdom:
phage

Quality

73.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 35-112
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03118.22 best RNA_pol_A_CTD 49.0 5.70e-13 82.0% 91.0%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1doqA00 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.81 66.0 6.96e-01 93.6% 100.0%
1xs9D00 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.78 62.0 6.13e-01 91.0% 82.7%
3osnA03 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.77 61.0 6.23e-01 88.5% 85.7%
2zj8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.75 51.0 5.80e-01 75.6% 96.5%
1ucvA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.66 53.0 5.31e-01 88.5% 85.2%
1v07A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.65 57.0 5.15e-01 100.0% 97.3%
1x9fA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 55.0 4.58e-01 100.0% 87.1%
3u5nA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.62 50.0 4.42e-01 91.0% 99.2%
2dkxA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.60 45.0 4.24e-01 80.8% 75.0%
1bqnA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.59 47.0 4.44e-01 94.9% 72.3%
5yjlB01 3.30.460.30 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain 0.58 45.0 3.64e-01 87.2% 78.9%
3berA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 46.0 3.33e-01 87.2% 97.7%
3fymA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 45.0 4.43e-01 100.0% 82.9%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 45.0 3.81e-01 92.3% 67.8%
4mudC00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 46.0 3.45e-01 100.0% 92.3%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.53 41.0 4.07e-01 89.7% 93.1%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 41.0 3.48e-01 87.2% 71.4%
2pl3A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 3.07e-01 89.7% 81.0%
5gvrA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 3.10e-01 92.3% 73.9%
4l22A02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 44.0 2.98e-01 100.0% 44.8%
1fuuB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 44.0 3.21e-01 96.2% 85.3%
2f33A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 38.0 4.00e-01 85.9% 88.7%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4559902 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.92 74.0 7.83e-01 84.6% 94.3%
4165308 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.91 67.0 7.58e-01 76.9% 100.0%
4155947 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.90 66.0 7.51e-01 78.2% 100.0%
4255937 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.89 80.0 7.54e-01 94.9% 84.4%
4228076 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.88 70.0 7.63e-01 84.6% 100.0%
4474556 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.88 65.0 7.27e-01 79.5% 100.0%
4082618 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.88 75.0 7.68e-01 92.3% 94.7%
4506619 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.87 74.0 6.64e-01 91.0% 67.6%
1292856 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.86 72.0 7.16e-01 89.7% 86.3%
4340260 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.85 65.0 7.15e-01 82.1% 100.0%
4350221 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.85 73.0 7.24e-01 92.3% 90.0%
4201496 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.84 69.0 7.04e-01 85.9% 92.0%
4546157 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.84 68.0 7.01e-01 85.9% 92.0%
3283042 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.84 60.0 6.77e-01 79.5% 96.7%
4285151 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.83 62.0 6.72e-01 80.8% 93.8%
4497953 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.83 68.0 6.76e-01 87.2% 87.5%
3554607 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.83 63.0 6.32e-01 80.8% 82.5%
4538575 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.82 70.0 6.51e-01 92.3% 77.9%
4272019 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.82 64.0 6.94e-01 92.3% 100.0%
3487665 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.81 60.0 6.66e-01 80.8% 100.0%
4168206 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.81 59.0 5.87e-01 75.6% 87.5%
3443197 102.1.1.179 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_XRCC3_RpoA 0.81 59.0 6.54e-01 79.5% 100.0%
3286960 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.80 73.0 4.40e-01 100.0% 49.2%
4403062 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.80 64.0 6.74e-01 87.2% 94.3%
3057038 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.80 58.0 6.43e-01 78.2% 96.7%
4669271 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.80 63.0 6.63e-01 83.3% 100.0%
3960638 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.79 60.0 6.49e-01 84.6% 95.4%
4345341 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.79 60.0 5.98e-01 82.1% 77.5%
3929386 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.79 60.0 6.32e-01 80.8% 94.3%
3869571 102.1.1.179 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_XRCC3_RpoA 0.78 56.0 5.83e-01 74.4% 84.3%
3987397 102.5.1.1 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.78 56.0 5.93e-01 76.9% 84.3%
364538 102.1.1.51 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH_1 0.77 53.0 5.67e-01 76.9% 83.3%
4420914 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.77 54.0 6.07e-01 80.8% 95.0%
5041504 102.5.1.1 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.77 57.0 6.02e-01 88.5% 88.6%
4152195 102.5.1.1 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.76 59.0 6.08e-01 88.5% 86.7%
4989822 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.76 51.0 5.87e-01 71.8% 100.0%
5056035 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.76 51.0 5.60e-01 75.6% 90.0%
4149240 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.75 53.0 5.51e-01 73.1% 82.9%
5022597 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.75 54.0 5.91e-01 83.3% 90.8%
4987624 102.1.1.119 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF4332 0.75 59.0 5.99e-01 85.9% 97.3%
4442475 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.75 58.0 6.24e-01 87.2% 100.0%
4948001 102.5.1.0 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.74 57.0 6.12e-01 88.5% 98.5%
3319098 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.74 54.0 5.48e-01 76.9% 96.0%
5076923 102.5.1.1 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.74 58.0 6.12e-01 88.5% 95.7%
3060630 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.74 56.0 6.05e-01 82.1% 98.4%
4977890 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.74 52.0 5.61e-01 80.8% 89.2%
5031290 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.73 56.0 5.89e-01 88.5% 91.4%
4066899 102.1.1.10 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.73 51.0 3.92e-01 73.1% 37.2%
5060570 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.73 51.0 5.02e-01 73.1% 69.4%
4063648 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.73 51.0 3.99e-01 73.1% 41.2%
5068422 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.73 51.0 5.04e-01 74.4% 74.1%
3389838 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.73 52.0 5.29e-01 74.4% 88.0%
4945133 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.73 54.0 5.83e-01 79.5% 100.0%
4380943 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.72 50.0 4.01e-01 73.1% 41.2%
3862132 102.1.1.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.72 55.0 5.60e-01 82.1% 84.0%
4597170 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.72 57.0 5.96e-01 88.5% 97.1%
4321047 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.71 50.0 3.90e-01 74.4% 36.8%
4204484 102.1.1.81 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 0.71 50.0 3.87e-01 74.4% 80.6%
3264576 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.70 55.0 5.68e-01 85.9% 94.7%
5040613 102.1.1.119 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF4332 0.70 53.0 4.41e-01 82.1% 57.1%
4551030 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.70 48.0 3.83e-01 73.1% 41.2%
4150545 102.1.1.104 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, HHH_2, HHH_5 0.70 50.0 3.90e-01 76.9% 80.6%
4574629 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.69 48.0 3.81e-01 73.1% 41.2%
4098561 102.1.1.96 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2, HHH_5 0.69 49.0 3.71e-01 74.4% 74.2%
4091625 102.1.1.10 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.69 51.0 3.93e-01 79.5% 56.1%
4965276 102.1.1.24 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.69 49.0 3.74e-01 75.6% 39.5%
None 0.69 50.0 3.86e-01 76.9% 79.4%
4243645 102.1.1.24 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.68 51.0 3.92e-01 79.5% 57.1%
4509914 102.1.1.10 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.68 51.0 3.87e-01 79.5% 55.6%
4404544 102.1.1.81 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 0.67 49.0 3.68e-01 76.9% 76.4%
4679202 102.1.1.79 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD+HHH_2+HHH_5 0.67 50.0 3.75e-01 79.5% 52.6%
4982189 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.67 52.0 5.43e-01 85.9% 97.1%
4455972 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.66 46.0 3.70e-01 73.1% 42.5%
4128729 102.1.1.96 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2, HHH_5 0.66 49.0 3.79e-01 79.5% 55.6%
4035758 102.1.1.96 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2, HHH_5 0.66 49.0 3.75e-01 80.8% 52.1%
4292069 102.1.1.10 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.65 49.0 3.78e-01 80.8% 55.6%
5059765 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.65 45.0 4.63e-01 74.4% 82.7%
1167050 101.1.2.145 alpha arrays › HTH › HTH › winged helix domain › HHH_4 0.61 48.0 3.98e-01 88.5% 66.2%
3206756 109.4.1.1261 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long 0.56 46.0 3.23e-01 89.7% 32.4%
3227060 109.4.1.372 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ECSIT_N 0.54 39.0 3.40e-01 78.2% 60.8%
3698583 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.53 44.0 3.17e-01 92.3% 89.1%
3720070 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.51 42.0 2.59e-01 92.3% 49.5%