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SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00178
Bact-VirSR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00178
Identity
- Kingdom:
- phage
Quality
77.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 9-56
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a1iA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.91 | 52.0 | 6.40e-01 | 72.9% | 93.3% |
| 5undA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.84 | 50.0 | 4.78e-01 | 77.1% | 53.7% |
| 4r2qA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.81 | 50.0 | 4.00e-01 | 77.1% | 34.1% |
| 4m9vC00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.79 | 45.0 | 4.19e-01 | 70.8% | 45.0% |
| 1llmD02 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.72 | 51.0 | 4.92e-01 | 100.0% | 65.5% |
| 1zu1A01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.58 | 41.0 | 3.91e-01 | 93.8% | 63.2% |
| 5b3hC01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.56 | 47.0 | 4.72e-01 | 100.0% | 95.8% |
| 1ra6A03 | 1.20.960.20 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › | 0.55 | 37.0 | 3.15e-01 | 83.3% | 40.2% |
| 2wbtB02 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.54 | 45.0 | 4.46e-01 | 97.9% | 86.5% |
| 4yztA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 42.0 | 2.61e-01 | 89.6% | 32.2% |
| 1bkjA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.52 | 42.0 | 2.82e-01 | 97.9% | 49.6% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3563573 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.93 | 55.0 | 4.48e-01 | 79.2% | 36.3% |
| 3503212 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.92 | 54.0 | 6.71e-01 | 72.9% | 96.7% |
| 3189467 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.91 | 56.0 | 4.79e-01 | 75.0% | 42.9% |
| 3220623 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.89 | 52.0 | 6.26e-01 | 75.0% | 96.6% |
| 3414376 | 386.1.1.238 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-C2H2_6 | 0.89 | 51.0 | 3.95e-01 | 83.3% | 29.5% |
| 3395562 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.89 | 54.0 | 6.60e-01 | 72.9% | 100.0% |
| None | — | 0.88 | 51.0 | 4.84e-01 | 75.0% | 50.9% | |
| 3171077 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.86 | 51.0 | 4.57e-01 | 77.1% | 44.6% |
| 3508081 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.86 | 47.0 | 4.32e-01 | 72.9% | 43.3% |
| 3932252 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.84 | 51.0 | 3.82e-01 | 77.1% | 27.3% |
| 3203321 | 386.1.1.133 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2+zf-C2H2_4 | 0.83 | 57.0 | 5.61e-01 | 70.8% | 86.0% |
| 3531637 | 386.1.1.233 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-H2C2_2 | 0.83 | 48.0 | 3.55e-01 | 77.1% | 25.5% |
| 3244794 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.83 | 52.0 | 5.14e-01 | 77.1% | 62.0% |
| 3517185 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.82 | 49.0 | 3.70e-01 | 83.3% | 27.6% |
| 3886235 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.82 | 47.0 | 3.84e-01 | 77.1% | 32.9% |
| 3894754 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.81 | 54.0 | 4.31e-01 | 70.8% | 41.9% |
| 3885252 | 386.1.1.264 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-C2H2_jaz | 0.80 | 46.0 | 4.42e-01 | 77.1% | 50.9% |
| 4195872 | 556.1.1.0 ↗ | alpha arrays › KRAB domain (Kruppel-associated box, Pfam 01352) › KRAB domain (Kruppel-associated box, Pfam 01352) › KRAB domain (Kruppel-associated box, Pfam 01352) | 0.80 | 46.0 | 3.42e-01 | 77.1% | 24.3% |
| 3747670 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.79 | 55.0 | 5.48e-01 | 72.9% | 78.0% |
| 3884317 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.76 | 45.0 | 3.75e-01 | 77.1% | 35.0% |
| 3874785 | 386.1.1.245 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-H2C2_2, zf-C2H2_6 | 0.76 | 44.0 | 3.71e-01 | 77.1% | 35.0% |
| 3398688 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.74 | 54.0 | 4.98e-01 | 77.1% | 78.3% |
| 3881310 | 386.1.1.233 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-H2C2_2 | 0.74 | 46.0 | 3.69e-01 | 72.9% | 33.3% |
| 3629866 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.73 | 51.0 | 4.85e-01 | 72.9% | 74.5% |
| 3241929 | 386.1.1.24 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_4 | 0.73 | 52.0 | 4.94e-01 | 75.0% | 72.7% |
| 3203481 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.72 | 50.0 | 4.80e-01 | 72.9% | 76.4% |
| 3937492 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.69 | 48.0 | 3.74e-01 | 72.9% | 34.3% |
| 3509059 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.69 | 50.0 | 4.69e-01 | 79.2% | 62.7% |
| 3522814 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.69 | 47.0 | 4.23e-01 | 91.7% | 52.3% |
| 3201083 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.68 | 51.0 | 4.73e-01 | 93.8% | 65.0% |
| 3722696 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.67 | 51.0 | 5.06e-01 | 93.8% | 78.0% |
| 3256902 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.67 | 58.0 | 4.82e-01 | 100.0% | 61.4% |
| 3844951 | 386.1.1.24 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_4 | 0.67 | 48.0 | 4.06e-01 | 77.1% | 48.8% |
| 3919764 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.67 | 40.0 | 3.33e-01 | 72.9% | 32.9% |
| 3204101 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.66 | 50.0 | 4.97e-01 | 93.8% | 78.0% |
| 3926940 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.65 | 51.0 | 4.18e-01 | 85.4% | 84.7% |
| 3531510 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.62 | 44.0 | 4.06e-01 | 89.6% | 56.9% |
| 3203324 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.59 | 47.0 | 4.75e-01 | 100.0% | 92.0% |
| 3235426 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.58 | 43.0 | 4.34e-01 | 81.2% | 80.0% |
| 3285338 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.53 | 35.0 | 2.99e-01 | 70.8% | 67.8% |
| 3180512 | 386.1.1.317 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_fungi | 0.53 | 46.0 | 4.45e-01 | 100.0% | 94.5% |
| 3254602 | 101.1.2.506 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 | 0.50 | 35.0 | 2.99e-01 | 77.1% | 47.8% |
| 4091216 | 3844.2.1.2 ↗ | a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › DUF5081 | 0.50 | 42.0 | 2.82e-01 | 97.9% | 58.5% |