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SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00198
Bact-VirSR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00198
Identity
- Kingdom:
- phage
Quality
53.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 372-484
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4divV01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.65 | 53.0 | 5.00e-01 | 86.7% | 96.4% |
| 3kyfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.65 | 50.0 | 5.01e-01 | 93.8% | 80.7% |
| 3wdhA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 37.0 | 4.05e-01 | 93.8% | 68.8% |
| 2k4qA00 | 4.10.410.40 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › | 0.63 | 54.0 | 4.88e-01 | 94.7% | 91.0% |
| 1wv4B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 49.0 | 4.42e-01 | 85.0% | 61.0% |
| 8ct0B01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 53.0 | 4.62e-01 | 91.2% | 84.3% |
| 3nfwA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 53.0 | 4.57e-01 | 92.9% | 75.4% |
| 1uscA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 52.0 | 4.48e-01 | 91.2% | 75.8% |
| 5choF00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 52.0 | 4.67e-01 | 92.0% | 85.6% |
| 2ecuA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.61 | 52.0 | 4.74e-01 | 92.0% | 83.9% |
| 2qckA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 51.0 | 4.62e-01 | 92.0% | 88.1% |
| 3pftA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 54.0 | 4.87e-01 | 100.0% | 88.5% |
| 2r6vA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 51.0 | 4.50e-01 | 93.8% | 81.7% |
| 4ybnB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 47.0 | 3.85e-01 | 85.0% | 64.4% |
| 1arbA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 45.0 | 4.40e-01 | 84.1% | 74.6% |
| 2ig6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 47.0 | 4.33e-01 | 85.0% | 76.2% |
| 1vl7A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 46.0 | 4.39e-01 | 85.0% | 90.4% |
| 1k0hA00 | 2.40.10.180 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins | 0.58 | 46.0 | 4.56e-01 | 100.0% | 81.2% |
| 2d37A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 52.0 | 4.72e-01 | 100.0% | 87.1% |
| 1rz1A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 52.0 | 4.75e-01 | 100.0% | 88.2% |
| 3szeA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.57 | 46.0 | 3.39e-01 | 86.7% | 36.0% |
| 4f07E00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 52.0 | 4.73e-01 | 100.0% | 86.6% |
| 2r0xA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 51.0 | 4.60e-01 | 100.0% | 89.1% |
| 4l82A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 51.0 | 4.59e-01 | 100.0% | 88.5% |
| 4xhyA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 51.0 | 4.56e-01 | 100.0% | 81.4% |
| 4z85A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 51.0 | 4.24e-01 | 100.0% | 75.6% |
| 1i0rA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 51.0 | 4.52e-01 | 100.0% | 84.5% |
| 3f7eA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 48.0 | 4.64e-01 | 93.8% | 89.1% |
| 1t9mA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 48.0 | 3.96e-01 | 94.7% | 71.6% |
| 5k9aA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.56 | 49.0 | 3.95e-01 | 96.5% | 79.5% |
| 3cb0D00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 50.0 | 4.44e-01 | 100.0% | 88.2% |
| 3bnkA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 49.0 | 4.19e-01 | 100.0% | 72.0% |
| 6mv2A01 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 40.0 | 4.21e-01 | 85.8% | 83.3% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 48.0 | 4.40e-01 | 96.5% | 83.7% |
| 7cayA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.54 | 38.0 | 3.98e-01 | 77.0% | 81.0% |
| 2iabA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 46.0 | 4.30e-01 | 93.8% | 76.2% |
| 4p02A03 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.53 | 43.0 | 4.25e-01 | 95.6% | 81.1% |
| 1fltX00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 31.0 | 3.31e-01 | 76.1% | 66.3% |
| 2aneH00 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.52 | 38.0 | 3.90e-01 | 77.0% | 84.4% |
| 1boqA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 38.0 | 3.95e-01 | 84.1% | 82.2% |
| 3f3bA00 | 2.40.10.370 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 | 0.51 | 44.0 | 4.46e-01 | 96.5% | 99.1% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3970015 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.67 | 48.0 | 5.19e-01 | 94.7% | 88.3% |
| 3974181 | 1.1.5.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF29489 | 0.64 | 47.0 | 5.09e-01 | 95.6% | 95.6% |
| 3625817 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.63 | 29.0 | 3.41e-01 | 71.7% | 58.7% |
| 4937158 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 30.0 | 3.87e-01 | 70.8% | 83.3% |
| 4656128 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.62 | 52.0 | 4.41e-01 | 92.0% | 80.5% |
| 5024463 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.61 | 52.0 | 4.48e-01 | 92.0% | 74.2% |
| 3720872 | 1.1.5.36 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_ox_like | 0.61 | 48.0 | 4.10e-01 | 85.0% | 64.3% |
| 3290435 | 1.1.5.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red | 0.61 | 49.0 | 4.30e-01 | 86.7% | 95.3% |
| 3636995 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.60 | 51.0 | 4.14e-01 | 92.9% | 82.8% |
| 4953373 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.59 | 47.0 | 4.51e-01 | 85.0% | 82.7% |
| 5056905 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.58 | 39.0 | 4.35e-01 | 83.2% | 87.8% |
| 162092 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.58 | 45.0 | 4.35e-01 | 85.0% | 82.4% |
| 195822 | 1.1.5.36 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_ox_like | 0.57 | 49.0 | 4.40e-01 | 94.7% | 70.6% |
| 4666540 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.57 | 37.0 | 4.16e-01 | 73.5% | 88.2% |
| 3387649 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.57 | 45.0 | 4.26e-01 | 85.0% | 81.5% |
| 1725861 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.56 | 51.0 | 4.24e-01 | 100.0% | 75.6% |
| 5044905 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.56 | 51.0 | 4.42e-01 | 100.0% | 77.7% |
| 4015499 | 1.1.5.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C | 0.56 | 48.0 | 3.84e-01 | 94.7% | 72.5% |
| 4983682 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.56 | 48.0 | 4.54e-01 | 95.6% | 88.6% |
| 3196012 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 28.0 | 3.17e-01 | 74.3% | 61.4% |
| 3519884 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.55 | 28.0 | 2.94e-01 | 71.7% | 51.0% |
| 3930540 | 11.1.1.848 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7585 | 0.54 | 31.0 | 3.50e-01 | 77.0% | 75.3% |
| 4976152 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.54 | 46.0 | 4.19e-01 | 95.6% | 78.7% |
| 3628983 | 10.10.1.1 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT | 0.53 | 43.0 | 4.21e-01 | 84.1% | 100.0% |
| 3443528 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.53 | 40.0 | 3.29e-01 | 87.6% | 41.9% |
| 5075917 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.53 | 46.0 | 4.21e-01 | 96.5% | 82.7% |
| 3420143 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.52 | 39.0 | 3.49e-01 | 85.8% | 55.0% |
| 4402977 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.52 | 36.0 | 3.29e-01 | 93.8% | 51.2% |
| 3434538 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.52 | 40.0 | 3.28e-01 | 93.8% | 43.3% |
| 3428120 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.51 | 44.0 | 3.33e-01 | 96.5% | 97.2% |
D2
medium
residues 36-111