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SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00200

Bact-Vir

SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00200

Identity

Kingdom:
phage

Quality

77.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 104-196_387-423
PDB
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1am2A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.91 88.0 7.66e-01 100.0% 98.9%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.90 86.0 7.76e-01 100.0% 96.5%
4e2tB00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.90 86.0 7.77e-01 100.0% 99.4%
1dq3A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.90 86.0 7.60e-01 100.0% 99.4%
1mi8A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.90 86.0 8.38e-01 100.0% 96.5%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.89 85.0 7.65e-01 100.0% 99.4%
2lcjA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.89 85.0 7.38e-01 100.0% 99.5%
5o9iA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.88 84.0 7.52e-01 100.0% 99.4%
1zdeA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.88 84.0 7.72e-01 100.0% 92.5%
2lwyA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.87 83.0 8.15e-01 100.0% 97.1%
2imzA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.87 82.0 7.95e-01 99.2% 100.0%
1dfaA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.86 82.0 6.90e-01 100.0% 99.5%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.86 82.0 7.85e-01 100.0% 97.9%
2jmzA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.86 81.0 7.35e-01 100.0% 99.4%
6zgqA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.85 80.0 7.63e-01 99.2% 100.0%
6vgwA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.85 80.0 7.78e-01 99.2% 97.2%
2dlgA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 28.0 3.36e-01 100.0% 83.7%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 25.0 3.37e-01 96.2% 92.4%
ECOD (97)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4993732 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.94 84.0 8.63e-01 100.0% 96.0%
3604383 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.93 89.0 7.32e-01 100.0% 98.6%
4994372 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.92 83.0 8.63e-01 98.5% 100.0%
4629526 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.92 88.0 6.37e-01 99.2% 99.4%
5012699 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.92 89.0 7.93e-01 100.0% 100.0%
4992651 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.92 88.0 7.99e-01 100.0% 95.8%
5065032 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.92 88.0 7.98e-01 99.2% 98.8%
4180552 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.91 88.0 7.95e-01 100.0% 99.4%
4998392 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.91 87.0 7.92e-01 99.2% 98.2%
4979989 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.91 87.0 7.66e-01 100.0% 96.1%
4084747 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.91 87.0 6.29e-01 100.0% 99.7%
5024341 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.91 87.0 7.57e-01 100.0% 96.8%
4993808 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.91 86.0 8.26e-01 98.5% 97.9%
3949431 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.91 87.0 8.24e-01 100.0% 99.3%
4544734 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.91 87.0 7.16e-01 99.2% 99.0%
5022295 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.91 87.0 7.91e-01 100.0% 97.6%
4977673 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.91 87.0 7.01e-01 100.0% 99.1%
4983458 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 87.0 7.86e-01 100.0% 98.8%
4982797 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.90 87.0 8.31e-01 100.0% 97.2%
5031634 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.90 86.0 7.95e-01 100.0% 94.4%
3604113 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.90 87.0 8.29e-01 100.0% 98.6%
4170121 69.1.1.11 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT, Intein_splicing 0.90 86.0 7.72e-01 100.0% 98.8%
2524072 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.90 86.0 7.74e-01 100.0% 98.2%
4392318 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.90 86.0 7.48e-01 100.0% 100.0%
5023539 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.90 86.0 7.99e-01 99.2% 100.0%
4993128 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 86.0 7.93e-01 100.0% 96.9%
4039971 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.90 86.0 7.64e-01 100.0% 97.7%
4993853 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 86.0 7.83e-01 100.0% 99.4%
4975578 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 86.0 6.51e-01 100.0% 56.4%
4979524 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 86.0 6.70e-01 100.0% 98.0%
4943231 69.1.1.16 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › ATP-synt_ab 0.90 86.0 7.54e-01 100.0% 97.2%
4993927 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.90 82.0 7.75e-01 94.6% 100.0%
5012957 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.90 86.0 7.64e-01 100.0% 98.3%
5066163 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 86.0 8.36e-01 99.2% 98.6%
4978263 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 86.0 7.82e-01 100.0% 95.8%
4971400 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 86.0 6.35e-01 100.0% 52.5%
5078549 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.90 86.0 7.88e-01 100.0% 96.2%
4594307 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.90 86.0 7.70e-01 100.0% 98.8%
4946209 69.1.1.18 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › DNA_topoisoIV 0.90 86.0 7.17e-01 100.0% 99.5%
4941327 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 81.0 7.73e-01 93.8% 98.6%
4940451 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.90 85.0 8.44e-01 99.2% 100.0%
5029355 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.89 85.0 8.01e-01 99.2% 99.3%
2445477 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.89 86.0 8.04e-01 100.0% 89.6%
4993813 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 85.0 7.80e-01 99.2% 97.5%
5030213 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.89 85.0 8.08e-01 100.0% 92.7%
4335483 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.89 85.0 6.88e-01 100.0% 99.6%
182766 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.89 85.0 7.38e-01 100.0% 99.5%
4054994 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 85.0 7.64e-01 100.0% 95.9%
5052154 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 85.0 7.71e-01 100.0% 98.8%
5029540 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.89 85.0 7.82e-01 100.0% 99.4%
5066389 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.89 85.0 7.31e-01 100.0% 97.4%
2553113 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 81.0 8.25e-01 100.0% 96.9%
5014854 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.89 85.0 6.96e-01 100.0% 97.2%
4930433 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.89 85.0 7.90e-01 100.0% 98.1%
5013038 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 85.0 7.78e-01 100.0% 97.5%
4983616 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 84.0 7.56e-01 100.0% 98.8%
3602706 69.1.1.3 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.88 85.0 8.29e-01 100.0% 97.1%
4975503 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 84.0 7.39e-01 100.0% 98.9%
4999902 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 84.0 8.02e-01 99.2% 98.6%
3603291 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.88 83.0 7.43e-01 100.0% 95.4%
2323756 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 84.0 7.77e-01 100.0% 100.0%
2546507 69.1.1.2 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint 0.88 83.0 8.05e-01 100.0% 99.3%
3282306 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 84.0 8.34e-01 100.0% 99.3%
5031914 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.88 84.0 7.28e-01 100.0% 94.1%
4388671 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 84.0 7.36e-01 100.0% 99.4%
4457379 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 84.0 8.07e-01 100.0% 92.4%
3952464 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.88 84.0 8.08e-01 100.0% 93.1%
5028312 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.88 84.0 8.17e-01 100.0% 95.7%
5002632 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 84.0 7.96e-01 100.0% 98.0%
4943244 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 83.0 7.48e-01 100.0% 99.4%
4993454 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.87 83.0 6.62e-01 100.0% 97.0%
5009161 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.87 82.0 6.11e-01 100.0% 98.7%
4993437 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.87 78.0 7.49e-01 93.1% 97.9%
3934143 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.87 83.0 8.08e-01 100.0% 99.3%
4291841 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.87 83.0 7.51e-01 99.2% 100.0%
5028788 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.87 83.0 8.08e-01 100.0% 97.1%
4600944 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.87 83.0 7.35e-01 100.0% 81.1%
4487998 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.87 83.0 7.35e-01 100.0% 81.1%
3517362 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.87 82.0 7.88e-01 99.2% 97.9%
4070999 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.87 82.0 7.70e-01 100.0% 91.6%
3518586 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.87 82.0 6.89e-01 100.0% 70.2%
3604439 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.86 82.0 7.37e-01 100.0% 97.1%
3936057 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.86 82.0 7.69e-01 100.0% 98.1%
4997604 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 82.0 7.39e-01 100.0% 95.3%
3230518 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.86 82.0 7.66e-01 100.0% 97.4%
3877825 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.86 82.0 6.80e-01 100.0% 71.9%
3234017 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.86 81.0 7.28e-01 99.2% 88.4%
164902 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.86 81.0 7.16e-01 100.0% 92.8%
4127166 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.86 82.0 7.76e-01 100.0% 99.3%
4948016 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 80.0 7.59e-01 97.7% 98.0%
3215378 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.85 80.0 7.57e-01 98.5% 97.3%
3511246 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.85 78.0 7.06e-01 95.4% 84.8%
4984220 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 78.0 7.31e-01 98.5% 99.4%
5028299 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.84 79.0 7.41e-01 100.0% 98.7%
2701967 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.83 79.0 7.74e-01 100.0% 98.5%
5065932 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.83 79.0 7.68e-01 100.0% 97.9%
4940699 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.81 77.0 7.16e-01 100.0% 98.1%
D2 high residues 204-378
PDB
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ef0B02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.71 66.0 6.46e-01 99.4% 91.5%
3hyiA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.71 65.0 6.31e-01 100.0% 89.0%
2cw8A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.71 64.0 6.51e-01 99.4% 98.8%
3iabB01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.58 31.0 3.98e-01 85.1% 88.9%
3u6yA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.52 28.0 3.63e-01 85.7% 90.9%
1whxA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 24.0 2.93e-01 86.3% 66.7%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4474382 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.73 48.0 5.74e-01 90.3% 94.4%
4991896 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.59 31.0 4.18e-01 84.0% 97.7%
5030848 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.55 43.0 4.68e-01 96.6% 96.6%
3603683 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.53 43.0 4.69e-01 96.6% 100.0%
4957499 223.1.1.192 a+b three layers › Profilin-like › sensor domains › sensor domains › DUF7287 0.51 28.0 3.14e-01 75.4% 67.7%
D3 medium residues 433-509_526-560
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vw4X00 2.20.28.120 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Ribosomal protein L33 0.59 31.0 3.95e-01 97.3% 89.1%
1jnrB02 6.20.260.10 Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain 0.53 22.0 2.57e-01 76.8% 48.2%
2xy1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 30.0 3.23e-01 89.3% 67.0%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.50 22.0 2.68e-01 75.0% 59.7%
D4 medium residues 891-952
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dgfA03 1.20.1370.60 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › 0.92 72.0 5.70e-01 82.3% 44.7%
4b7hA03 1.20.1370.60 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › 0.89 70.0 5.62e-01 83.9% 45.2%
3ajcA01 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.85 59.0 4.85e-01 72.6% 44.2%
2kiwA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.74 62.0 5.55e-01 91.9% 79.1%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.74 52.0 5.18e-01 77.4% 71.4%
2khvA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.72 59.0 5.32e-01 88.7% 75.3%
3k2oB02 1.20.1280.270 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.71 49.0 5.48e-01 75.8% 100.0%
2zfuA01 1.10.10.2150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal RNA-processing protein 8, N-terminal domain 0.70 49.0 5.32e-01 77.4% 90.2%
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.70 52.0 5.26e-01 82.3% 100.0%
1lkvX02 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.70 57.0 4.42e-01 88.7% 56.1%
1x4oA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.69 58.0 5.39e-01 95.2% 83.3%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.68 48.0 4.75e-01 77.4% 68.7%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 48.0 4.56e-01 80.6% 63.0%
3gxhA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.67 47.0 3.55e-01 85.5% 30.1%
2p67A01 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.64 46.0 4.94e-01 77.4% 94.2%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.64 50.0 4.36e-01 87.1% 90.8%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.64 45.0 4.19e-01 75.8% 93.8%
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.63 47.0 4.14e-01 82.3% 90.7%
6qumQ00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.63 44.0 4.20e-01 74.2% 75.7%
1aj3A00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 49.0 4.29e-01 87.1% 95.9%
2b8iA00 1.20.1280.100 Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain 0.63 48.0 4.59e-01 87.1% 77.9%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.61 42.0 3.85e-01 72.6% 52.9%
2prrA02 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.61 49.0 4.03e-01 95.2% 46.5%
2k85A00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.60 48.0 4.79e-01 91.9% 96.9%
2zwiA01 3.40.50.11120 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sialyltransferase, N-terminal GT-B Rossman nucleotide-binding domain 0.60 47.0 3.32e-01 88.7% 79.8%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 46.0 4.36e-01 88.7% 98.7%
5f42A02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.59 47.0 4.32e-01 87.1% 72.0%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.59 40.0 3.99e-01 72.6% 66.2%
2d9jA02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.59 43.0 4.02e-01 79.0% 88.6%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.58 44.0 3.88e-01 87.1% 85.3%
3llkA02 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.58 50.0 3.88e-01 98.4% 84.6%
2zb9A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 49.0 3.92e-01 100.0% 64.5%
2yx8A00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.58 44.0 4.15e-01 88.7% 93.8%
2yksA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.57 49.0 4.06e-01 100.0% 70.1%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.56 43.0 3.95e-01 91.9% 89.4%
2whnA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.56 45.0 3.81e-01 91.9% 72.7%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
54005 4048.1.1.1 alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel 0.94 73.0 7.20e-01 82.3% 77.3%
4071317 4048.1.1.1 alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel 0.92 69.0 7.09e-01 79.0% 81.7%
4890281 4048.1.1.1 alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel 0.91 65.0 7.39e-01 74.2% 100.0%
4230337 4048.1.1.1 alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel 0.90 82.0 7.44e-01 98.4% 81.2%
3627 4048.1.1.1 alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel 0.90 66.0 6.15e-01 77.4% 63.2%
5074061 4048.1.1.0 alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases 0.89 67.0 6.88e-01 82.3% 83.1%
4160596 4048.1.1.1 alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel 0.88 69.0 6.16e-01 82.3% 61.4%
3697127 4048.1.1.1 alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel 0.87 70.0 6.75e-01 87.1% 80.0%
3167536 4048.1.1.1 alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel 0.86 72.0 6.77e-01 90.3% 77.3%
4207224 4048.1.1.1 alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel 0.85 76.0 6.85e-01 100.0% 74.1%
2588647 4048.1.1.1 alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel 0.84 66.0 6.08e-01 83.9% 68.4%
4218333 531.1.1.1 alpha arrays › Domains of FliG › C-terminal domain of FliG › C-terminal domain of FliG › FliG_C 0.83 70.0 5.18e-01 88.7% 57.1%
4226353 531.1.1.2 alpha arrays › Domains of FliG › C-terminal domain of FliG › C-terminal domain of FliG › FliG_C+FliG_M+FliG_N 0.82 69.0 4.29e-01 90.3% 19.3%
4678690 4048.1.1.0 alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases 0.80 72.0 6.59e-01 100.0% 82.5%
4230002 531.1.1.3 alpha arrays › Domains of FliG › C-terminal domain of FliG › C-terminal domain of FliG › FliG_C, FliG_M 0.79 69.0 4.60e-01 93.5% 27.3%
4215846 531.1.1.2 alpha arrays › Domains of FliG › C-terminal domain of FliG › C-terminal domain of FliG › FliG_C+FliG_M+FliG_N 0.79 72.0 4.47e-01 98.4% 27.3%
4339703 531.1.1.1 alpha arrays › Domains of FliG › C-terminal domain of FliG › C-terminal domain of FliG › FliG_C 0.78 65.0 4.87e-01 88.7% 41.4%
4261007 4973.1.1.1 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.78 59.0 5.81e-01 80.6% 80.0%
4200585 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.76 52.0 4.30e-01 75.8% 41.9%
4524350 1025.1.1.1 alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin_helical 0.75 51.0 4.15e-01 75.8% 40.0%
3499876 574.1.1.0 alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) 0.74 64.0 6.09e-01 98.4% 94.7%
4669284 531.1.1.3 alpha arrays › Domains of FliG › C-terminal domain of FliG › C-terminal domain of FliG › FliG_C, FliG_M 0.74 67.0 4.49e-01 98.4% 29.3%
3704038 574.1.1.1 alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp 0.71 58.0 5.60e-01 90.3% 92.9%
3488291 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.70 55.0 4.64e-01 85.5% 90.5%
3201166 604.7.1.0 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A 0.69 55.0 4.28e-01 87.1% 81.5%
3608747 574.1.1.0 alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) 0.68 54.0 5.52e-01 87.1% 100.0%
3206488 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.68 47.0 5.04e-01 82.3% 92.0%
3243059 564.1.1.10 alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › ANIS5_cation-bd 0.68 56.0 5.37e-01 96.8% 81.3%
3256151 207.1.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.67 51.0 3.04e-01 85.5% 16.2%
3594525 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.67 52.0 4.47e-01 85.5% 91.0%
3617244 109.4.1.839 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Maestro_HEAT 0.66 51.0 3.17e-01 88.7% 14.4%
3731176 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 56.0 3.82e-01 96.8% 69.6%
4311864 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.65 52.0 4.30e-01 91.9% 79.2%
3731818 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.63 53.0 3.28e-01 100.0% 36.9%
4109908 5041.1.1.1 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.63 43.0 3.97e-01 72.6% 55.3%
4681362 3054.1.1.0 alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol 0.62 50.0 3.95e-01 85.5% 71.7%
3503335 604.1.1.124 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_6 0.62 47.0 3.94e-01 85.5% 90.4%
4826095 5067.1.1.5 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Sterol-sensing 0.61 42.0 3.77e-01 72.6% 52.7%
5034998 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.61 43.0 4.29e-01 75.8% 86.2%
3883972 604.1.1.202 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › MBOAT 0.60 52.0 3.75e-01 100.0% 51.6%
138692 109.1.1.7 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_3 0.59 48.0 3.92e-01 93.5% 90.6%
3990749 103.1.1.28 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_8 0.57 38.0 3.92e-01 72.6% 73.3%
3279303 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 47.0 3.23e-01 100.0% 50.0%
5013384 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.56 43.0 3.41e-01 90.3% 87.3%
4180835 5041.1.1.1 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.56 39.0 3.80e-01 75.8% 65.7%
3417054 103.1.1.85 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF28528 0.53 44.0 4.40e-01 93.5% 90.8%