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SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00218
Bact-VirSR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00218
Identity
- Kingdom:
- phage
Quality
76.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-105
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g2sA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.54 | 32.0 | 3.75e-01 | 73.3% | 90.6% |
| 4e6fA00 | 3.30.530.80 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.54 | 45.0 | 3.85e-01 | 94.1% | 82.5% |
| 3vskA03 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 37.0 | 2.66e-01 | 80.2% | 74.0% |
| 2yh6D00 | 3.30.530.50 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.50 | 40.0 | 3.94e-01 | 88.1% | 88.2% |
| 4k08A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 36.0 | 3.32e-01 | 78.2% | 70.8% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3953421 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.59 | 46.0 | 4.15e-01 | 84.2% | 80.0% |
| 3942090 | 1.1.5.77 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube | 0.59 | 48.0 | 4.14e-01 | 91.1% | 87.9% |
| 3412626 | 223.1.1.108 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2, PF30670 | 0.57 | 44.0 | 2.88e-01 | 84.2% | 53.9% |
| 3280741 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.56 | 44.0 | 4.01e-01 | 83.2% | 68.9% |
| 4959068 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.56 | 41.0 | 2.93e-01 | 78.2% | 34.6% |
| 3500172 | 223.1.1.98 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 | 0.55 | 45.0 | 2.96e-01 | 90.1% | 44.4% |
| 3859971 | 223.1.1.108 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2, PF30670 | 0.55 | 45.0 | 3.00e-01 | 92.1% | 52.7% |
| 3561487 | 223.1.1.108 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2, PF30670 | 0.54 | 45.0 | 2.93e-01 | 93.1% | 51.5% |
| 3877917 | 223.1.1.98 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 | 0.54 | 41.0 | 3.78e-01 | 83.2% | 85.7% |
| 3487774 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 40.0 | 3.81e-01 | 80.2% | 92.0% |
| 3212189 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.53 | 35.0 | 3.37e-01 | 93.1% | 57.4% |
| 1806521 | 331.3.1.50 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF29358 | 0.53 | 45.0 | 4.26e-01 | 94.1% | 87.1% |
| 3397417 | 223.1.1.98 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 | 0.53 | 40.0 | 3.81e-01 | 81.2% | 100.0% |
| 3532860 | 223.1.1.102 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › VWA_N, PF30670 | 0.53 | 40.0 | 2.79e-01 | 79.2% | 34.7% |
| 3244040 | 223.1.1.108 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2, PF30670 | 0.53 | 41.0 | 2.73e-01 | 84.2% | 53.1% |
| 5021201 | 3488.1.1.0 ↗ | a+b three layers › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain | 0.53 | 37.0 | 3.43e-01 | 74.3% | 82.2% |
| 4959104 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.52 | 37.0 | 3.64e-01 | 76.2% | 97.4% |
| 4958220 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.52 | 38.0 | 3.54e-01 | 77.2% | 86.9% |
| 1790181 | 331.22.1.2 ↗ | a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 | 0.52 | 43.0 | 3.52e-01 | 94.1% | 56.5% |
| 3485455 | 223.1.1.29 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 | 0.51 | 37.0 | 3.47e-01 | 76.2% | 83.8% |
| 4238255 | 331.22.1.2 ↗ | a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 | 0.50 | 42.0 | 3.46e-01 | 94.1% | 57.4% |