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SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00229
Bact-VirSR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00229
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 59-181
Domain cluster:
rep: IMGVR_UViG_3300021509_000003-3300021509-Ga0190304_100009151__D537-667
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00188.33 best | CAP | 27.6 | 6.50e-06 | 97.6% | 86.6% |
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ifaA01 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.95 | 76.0 | 5.60e-01 | 100.0% | 36.2% |
| 4d53A00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.93 | 76.0 | 7.43e-01 | 100.0% | 78.2% |
| 4h0aA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.91 | 68.0 | 4.96e-01 | 100.0% | 32.2% |
| 5vhgA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.80 | 69.0 | 6.32e-01 | 100.0% | 72.7% |
| 4p27A00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.79 | 66.0 | 5.98e-01 | 100.0% | 68.4% |
| 5jysA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.75 | 61.0 | 5.79e-01 | 100.0% | 73.0% |
| 4tpvA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.74 | 58.0 | 4.99e-01 | 100.0% | 54.9% |
| 1cfeA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.73 | 60.0 | 5.80e-01 | 100.0% | 77.8% |
| 1u53A00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.70 | 63.0 | 5.29e-01 | 100.0% | 59.6% |
| 4bfeA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 31.0 | 3.79e-01 | 81.3% | 66.7% |
| 7k0xA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 32.0 | 4.01e-01 | 80.5% | 73.1% |
| 4bfiB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 33.0 | 3.84e-01 | 81.3% | 65.6% |
| 2vqeC02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.63 | 47.0 | 5.13e-01 | 95.9% | 94.0% |
| 4i0kA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 34.0 | 3.78e-01 | 81.3% | 67.4% |
| 4r6uA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 32.0 | 3.54e-01 | 81.3% | 61.2% |
| 6x4tA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 31.0 | 3.69e-01 | 79.7% | 71.8% |
| 1fp5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 34.0 | 3.77e-01 | 81.3% | 70.0% |
| 2raqA01 | 3.30.70.1340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain | 0.58 | 27.0 | 3.18e-01 | 98.4% | 60.0% |
| 3e3pA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 35.0 | 4.22e-01 | 93.5% | 97.4% |
| 2pgcA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 32.0 | 3.40e-01 | 100.0% | 62.3% |
| 4bbyA05 | 3.30.300.330 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.56 | 34.0 | 3.67e-01 | 95.1% | 69.4% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.54 | 28.0 | 3.41e-01 | 100.0% | 78.4% |
| 3o4oB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 34.0 | 3.60e-01 | 81.3% | 69.7% |
| 6efyA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 30.0 | 3.36e-01 | 81.3% | 67.3% |
| 1vr4E00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.52 | 37.0 | 4.22e-01 | 100.0% | 96.8% |
| 4wsqB00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.52 | 36.0 | 2.74e-01 | 95.9% | 28.1% |
| 2petA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 33.0 | 3.43e-01 | 82.1% | 67.2% |
| 7r3eB02 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.52 | 38.0 | 3.46e-01 | 75.6% | 76.1% |
| 3a27A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 41.0 | 3.45e-01 | 86.2% | 76.7% |
| 2yqzA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 42.0 | 3.61e-01 | 90.2% | 88.6% |
| 3dbaA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.50 | 37.0 | 3.31e-01 | 75.6% | 81.3% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031162 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.97 | 79.0 | 7.74e-01 | 97.6% | 79.2% |
| 1031145 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.95 | 76.0 | 7.42e-01 | 100.0% | 75.9% |
| 3968107 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.93 | 78.0 | 7.44e-01 | 98.4% | 75.7% |
| 1697211 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.93 | 76.0 | 7.43e-01 | 100.0% | 78.2% |
| 224049 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.91 | 68.0 | 6.89e-01 | 100.0% | 77.0% |
| 3952808 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.90 | 76.0 | 7.37e-01 | 100.0% | 80.0% |
| 5084002 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.89 | 75.0 | 7.21e-01 | 100.0% | 78.5% |
| 3283186 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.88 | 76.0 | 7.14e-01 | 100.0% | 75.9% |
| 3963099 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.87 | 74.0 | 7.14e-01 | 100.0% | 80.0% |
| 3235186 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.86 | 61.0 | 6.53e-01 | 98.4% | 82.6% |
| 3992804 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.85 | 59.0 | 6.28e-01 | 96.7% | 79.1% |
| 3718069 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.84 | 66.0 | 5.99e-01 | 100.0% | 63.9% |
| 4942971 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.81 | 77.0 | 6.76e-01 | 98.4% | 85.7% |
| 3677724 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.81 | 64.0 | 5.89e-01 | 100.0% | 66.7% |
| 5015571 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.80 | 75.0 | 6.84e-01 | 96.7% | 82.4% |
| 3278331 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.80 | 77.0 | 7.16e-01 | 100.0% | 84.1% |
| 3412746 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.79 | 65.0 | 6.00e-01 | 100.0% | 69.3% |
| 3939771 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.79 | 66.0 | 6.21e-01 | 100.0% | 73.6% |
| 3992603 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.77 | 53.0 | 3.90e-01 | 100.0% | 29.8% |
| 3882395 | 864.1.1.8 ↗ | a+b two layers › DLC › DLC › DLC › CEP76_C | 0.77 | 62.0 | 5.98e-01 | 100.0% | 76.3% |
| 3477325 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.77 | 67.0 | 6.00e-01 | 100.0% | 69.6% |
| 3804390 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.76 | 64.0 | 6.15e-01 | 100.0% | 78.5% |
| 3495541 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.76 | 66.0 | 6.09e-01 | 100.0% | 73.3% |
| 3478962 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.76 | 66.0 | 5.84e-01 | 100.0% | 66.7% |
| 3499933 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.75 | 58.0 | 5.74e-01 | 100.0% | 76.9% |
| 3617194 | 864.1.1.0 ↗ | a+b two layers › DLC › DLC › DLC | 0.75 | 58.0 | 5.73e-01 | 100.0% | 76.9% |
| 3758929 | 273.1.1.2 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C | 0.75 | 59.0 | 5.85e-01 | 100.0% | 79.2% |
| 3470916 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.74 | 66.0 | 6.00e-01 | 100.0% | 72.9% |
| 3929967 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.74 | 58.0 | 5.72e-01 | 100.0% | 77.7% |
| 3312180 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.74 | 65.0 | 5.92e-01 | 100.0% | 72.3% |
| 3656682 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.74 | 65.0 | 5.48e-01 | 100.0% | 60.5% |
| 3439855 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.73 | 66.0 | 6.03e-01 | 100.0% | 75.2% |
| 3448585 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.72 | 68.0 | 6.41e-01 | 99.2% | 84.8% |
| 3250158 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.72 | 61.0 | 5.56e-01 | 100.0% | 69.7% |
| 3427297 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.72 | 66.0 | 6.21e-01 | 100.0% | 81.4% |
| 3234985 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.70 | 61.0 | 5.18e-01 | 100.0% | 58.9% |
| 3812911 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.70 | 63.0 | 5.98e-01 | 100.0% | 82.1% |
| 3614061 | 864.1.1.8 ↗ | a+b two layers › DLC › DLC › DLC › CEP76_C | 0.70 | 61.0 | 5.78e-01 | 100.0% | 79.7% |
| 4001525 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.69 | 67.0 | 4.62e-01 | 100.0% | 82.6% |
| 3449329 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.69 | 63.0 | 5.72e-01 | 100.0% | 74.4% |
| 3997567 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.68 | 65.0 | 5.56e-01 | 100.0% | 79.5% |
| 3492449 | 256.1.1.9 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › YbjQ_3 | 0.67 | 38.0 | 4.80e-01 | 100.0% | 93.3% |
| 3991695 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.66 | 58.0 | 4.95e-01 | 100.0% | 61.4% |
| 3233121 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.65 | 62.0 | 4.94e-01 | 100.0% | 62.7% |
| 4008366 | 812.1.1.0 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain | 0.60 | 36.0 | 4.07e-01 | 96.7% | 78.9% |
| 4607326 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.60 | 35.0 | 3.79e-01 | 81.3% | 67.6% |
| 4616084 | 864.1.1.2 ↗ | a+b two layers › DLC › DLC › DLC › Tctex-1 | 0.58 | 47.0 | 4.97e-01 | 100.0% | 99.1% |
| 4376910 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.58 | 35.0 | 3.89e-01 | 81.3% | 76.8% |
| 3491163 | 864.1.1.2 ↗ | a+b two layers › DLC › DLC › DLC › Tctex-1 | 0.55 | 49.0 | 4.86e-01 | 98.4% | 96.1% |
| 5006044 | 206.1.1.268 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF6206 | 0.54 | 41.0 | 3.19e-01 | 96.7% | 34.6% |
| 4132512 | 331.10.1.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox | 0.53 | 40.0 | 2.88e-01 | 78.0% | 89.9% |
| 4457840 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.53 | 34.0 | 4.00e-01 | 77.2% | 95.3% |
| 4026407 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.52 | 32.0 | 3.24e-01 | 79.7% | 58.5% |
| 3923792 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 36.0 | 2.80e-01 | 94.3% | 30.3% |
| 3993006 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 35.0 | 2.67e-01 | 97.6% | 28.5% |