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SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00250
Bact-VirSR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00250
Identity
- Kingdom:
- phage
Quality
58.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 16-113
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8a1gC01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.86 | 59.0 | 4.70e-01 | 70.4% | 49.2% |
| 4g3aB00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.82 | 58.0 | 4.27e-01 | 72.4% | 32.1% |
| 3whjA00 | 6.10.140.1710 | Special › Helix non-globular › Helix Hairpins › | 0.82 | 46.0 | 4.39e-01 | 72.4% | 49.5% |
| 6whbA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.79 | 54.0 | 3.80e-01 | 70.4% | 24.9% |
| 3edvB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 69.0 | 6.12e-01 | 94.9% | 91.9% |
| 4y5jA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.77 | 55.0 | 4.14e-01 | 74.5% | 63.4% |
| 2w3cA02 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.75 | 53.0 | 3.73e-01 | 72.4% | 50.0% |
| 4flbA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.74 | 51.0 | 4.59e-01 | 71.4% | 52.7% |
| 1juqC00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.72 | 50.0 | 4.35e-01 | 71.4% | 76.5% |
| 1bk6A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.70 | 52.0 | 3.33e-01 | 76.5% | 19.7% |
| 4xriA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.70 | 65.0 | 3.75e-01 | 100.0% | 68.9% |
| 5cwhA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.70 | 49.0 | 4.13e-01 | 71.4% | 46.8% |
| 4u2xF00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.70 | 51.0 | 4.17e-01 | 76.5% | 46.3% |
| 1xqrA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.70 | 48.0 | 3.48e-01 | 71.4% | 28.1% |
| 1x5bA01 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.69 | 50.0 | 4.46e-01 | 75.5% | 85.9% |
| 1qgrA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.69 | 61.0 | 3.57e-01 | 100.0% | 75.4% |
| 3dadA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.68 | 47.0 | 3.25e-01 | 71.4% | 23.1% |
| 3sl9B00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.67 | 46.0 | 3.88e-01 | 71.4% | 46.1% |
| 2ap3A00 | 1.20.120.570 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YkyA-like | 0.67 | 54.0 | 4.31e-01 | 86.7% | 72.4% |
| 1u6gC00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.67 | 54.0 | 3.02e-01 | 85.7% | 82.8% |
| 8sorA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.66 | 48.0 | 3.25e-01 | 75.5% | 34.6% |
| 4d49A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.65 | 46.0 | 3.43e-01 | 72.4% | 63.9% |
| 1ll1A01 | 1.20.1370.10 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Hemocyanin, N-terminal domain | 0.65 | 46.0 | 4.64e-01 | 73.5% | 75.8% |
| 4r0zA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.64 | 48.0 | 3.01e-01 | 79.6% | 41.8% |
| 3vhlA02 | 1.20.58.740 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C | 0.64 | 47.0 | 4.41e-01 | 77.6% | 78.3% |
| 2jqqA00 | 1.20.58.1240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 51.0 | 4.33e-01 | 85.7% | 64.3% |
| 3ccyA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 42.0 | 3.64e-01 | 70.4% | 59.2% |
| 3ismC01 | 1.25.40.240 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ku, C-terminal domain | 0.61 | 44.0 | 3.82e-01 | 76.5% | 53.9% |
| 1z3xA01 | 1.25.40.620 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 42.0 | 3.59e-01 | 71.4% | 46.3% |
| 5d18A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 46.0 | 3.62e-01 | 80.6% | 62.4% |
| 3l6xA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.59 | 52.0 | 3.47e-01 | 100.0% | 80.4% |
| 4rv1F00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.58 | 48.0 | 3.19e-01 | 89.8% | 65.0% |
| 1xm9A01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.58 | 47.0 | 3.12e-01 | 86.7% | 74.6% |
| 4dveA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.56 | 40.0 | 3.27e-01 | 75.5% | 82.0% |
| 4it4A02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.53 | 40.0 | 4.17e-01 | 81.6% | 100.0% |
| 1q90B00 | 1.20.810.10 | Mainly Alpha › Up-down Bundle › Cytochrome Bc1 Complex; Chain C › Cytochrome Bc1 Complex; Chain C | 0.52 | 41.0 | 3.20e-01 | 83.7% | 53.8% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3616050 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.85 | 62.0 | 4.21e-01 | 74.5% | 50.5% |
| 3191854 | 109.4.1.170 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CLASP_N | 0.85 | 60.0 | 3.61e-01 | 72.4% | 12.6% |
| 3583269 | 109.4.1.266 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › XMAP215_CLASP_TOG | 0.85 | 61.0 | 3.67e-01 | 74.5% | 25.9% |
| 3234252 | 109.4.1.266 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › XMAP215_CLASP_TOG | 0.84 | 60.0 | 4.22e-01 | 73.5% | 52.1% |
| 4001377 | 109.4.1.266 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › XMAP215_CLASP_TOG | 0.84 | 61.0 | 4.16e-01 | 74.5% | 50.2% |
| 3217250 | 109.4.1.934 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ATR | 0.84 | 57.0 | 3.28e-01 | 70.4% | 8.3% |
| 3941107 | 109.4.1.166 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3535 | 0.80 | 62.0 | 3.54e-01 | 81.6% | 9.3% |
| 3873832 | 109.4.1.84 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › API5 | 0.78 | 54.0 | 4.44e-01 | 71.4% | 41.8% |
| 4001030 | 109.4.1.66 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Hamartin | 0.77 | 53.0 | 3.66e-01 | 71.4% | 31.7% |
| 3532935 | 109.4.1.1965 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28295 | 0.76 | 54.0 | 3.58e-01 | 72.4% | 20.3% |
| 3860384 | 109.4.1.1370 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, XMAP215_CLASP_TOG | 0.74 | 50.0 | 3.69e-01 | 71.4% | 27.9% |
| 3594799 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.74 | 62.0 | 4.44e-01 | 91.8% | 32.8% |
| 4603230 | 109.4.1.3353 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › API5, HEAT_2 | 0.74 | 53.0 | 4.38e-01 | 74.5% | 42.9% |
| 4018811 | 603.1.1.158 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › KAR9 | 0.73 | 65.0 | 5.86e-01 | 95.9% | 97.7% |
| 3633453 | 109.4.1.46 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N | 0.72 | 53.0 | 3.55e-01 | 77.6% | 20.5% |
| 3457118 | 109.4.1.46 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N | 0.72 | 52.0 | 3.62e-01 | 75.5% | 24.8% |
| 4943436 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.71 | 50.0 | 3.49e-01 | 72.4% | 32.9% |
| 3610191 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 49.0 | 4.35e-01 | 71.4% | 52.6% |
| 3276069 | 109.4.1.114 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-T | 0.70 | 55.0 | 3.38e-01 | 82.7% | 16.2% |
| None | — | 0.69 | 51.0 | 3.72e-01 | 76.5% | 30.0% | |
| 3396744 | 603.1.1.6 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 | 0.69 | 61.0 | 4.81e-01 | 95.9% | 61.0% |
| 3676734 | 109.4.1.1609 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, IBN_N, TPR_IPO5 | 0.69 | 48.0 | 3.63e-01 | 73.5% | 97.5% |
| 4587003 | 109.4.1.46 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N | 0.69 | 48.0 | 2.79e-01 | 73.5% | 8.0% |
| 3330491 | 109.4.1.1396 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, TPR_IPO5 | 0.68 | 48.0 | 3.47e-01 | 73.5% | 97.5% |
| 3784860 | 109.4.1.1471 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IPO5 | 0.68 | 47.0 | 3.40e-01 | 72.4% | 28.0% |
| 4030316 | 109.4.1.1251 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_XPO7 | 0.67 | 58.0 | 3.31e-01 | 96.9% | 90.8% |
| 3314878 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 47.0 | 3.48e-01 | 72.4% | 61.7% |
| 3416768 | 109.4.1.42 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CAS_CSE1,IBN_N,Cse1 | 0.66 | 59.0 | 3.41e-01 | 99.0% | 89.1% |
| 3640864 | 109.4.1.1420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Laa1_Sip1_HTR5, HEAT_HEATR5A | 0.66 | 60.0 | 3.36e-01 | 100.0% | 87.3% |
| 3910262 | 109.4.1.159 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ELMO_ARM | 0.66 | 46.0 | 3.36e-01 | 72.4% | 28.5% |
| 3628213 | 109.4.1.266 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › XMAP215_CLASP_TOG | 0.66 | 55.0 | 3.89e-01 | 92.9% | 29.4% |
| 3765032 | 633.23.1.34 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 | 0.66 | 50.0 | 4.35e-01 | 79.6% | 84.1% |
| 2555649 | 109.4.1.1268 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, HEAT_2 | 0.65 | 46.0 | 3.39e-01 | 72.4% | 47.0% |
| 4438177 | 109.4.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm | 0.65 | 57.0 | 3.44e-01 | 100.0% | 51.2% |
| 4116114 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 57.0 | 3.70e-01 | 100.0% | 56.3% |
| 3248621 | 109.4.1.1463 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28490 | 0.64 | 55.0 | 3.14e-01 | 98.0% | 90.9% |
| 3670793 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 56.0 | 3.21e-01 | 100.0% | 99.8% |
| 3737767 | 109.4.1.3490 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, TPR_SYO1 | 0.63 | 55.0 | 3.38e-01 | 98.0% | 71.6% |
| 3934052 | 109.4.1.209 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Katanin_con80 | 0.63 | 47.0 | 3.94e-01 | 82.7% | 45.9% |
| 3656073 | 109.4.1.47 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N,Xpo1,CRM1_C,CRM1_repeat,CRM1_repeat_2,CRM1_repeat_3 | 0.62 | 52.0 | 2.93e-01 | 90.8% | 10.3% |
| 3922194 | 109.4.1.42 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CAS_CSE1,IBN_N,Cse1 | 0.62 | 55.0 | 3.30e-01 | 99.0% | 85.7% |
| 5019453 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.62 | 55.0 | 3.31e-01 | 100.0% | 92.8% |
| 3355773 | 109.4.1.47 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N,Xpo1,CRM1_C,CRM1_repeat,CRM1_repeat_2,CRM1_repeat_3 | 0.60 | 52.0 | 3.00e-01 | 100.0% | 76.5% |
| 3633595 | 5001.1.1.39 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › RTA1 | 0.59 | 52.0 | 3.58e-01 | 93.9% | 47.9% |
| 3827993 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 51.0 | 3.41e-01 | 100.0% | 68.3% |
| 4980007 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.56 | 48.0 | 3.89e-01 | 96.9% | 99.5% |
| 5004497 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 48.0 | 3.14e-01 | 100.0% | 85.4% |
D2
medium
residues 114-211