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SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00269

Bact-Vir

SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00269

Identity

Kingdom:
phage

Quality

60.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-83
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.73 33.0 2.94e-01 74.7% 31.2%
5yzzC00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.64 46.0 4.23e-01 77.1% 93.7%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 43.0 3.96e-01 79.5% 57.4%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 40.0 3.73e-01 72.3% 60.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 32.0 3.53e-01 98.8% 68.2%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 30.0 3.28e-01 91.6% 62.1%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 43.0 3.52e-01 89.2% 60.7%
4s21B02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 34.0 3.08e-01 90.4% 45.4%
3bjeA01 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 44.0 3.01e-01 97.6% 61.2%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 45.0 3.96e-01 100.0% 89.5%
1c9fA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 37.0 3.73e-01 96.4% 74.7%
7q5yB01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.50 35.0 3.13e-01 71.1% 71.7%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 29.0 3.23e-01 98.8% 74.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1780023 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.69 40.0 3.87e-01 89.2% 50.5%
3972580 331.1.1.3 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AlkA_N 0.68 30.0 3.14e-01 74.7% 43.8%
3287903 802.1.1.1 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.64 28.0 3.53e-01 75.9% 66.0%
3973606 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 30.0 3.48e-01 100.0% 69.1%
4138663 4099.1.1.3 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.57 32.0 3.55e-01 98.8% 69.2%
3998976 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.56 28.0 3.60e-01 74.7% 86.7%
4027323 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.56 47.0 3.53e-01 98.8% 37.9%
3592513 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 48.0 3.26e-01 100.0% 77.1%
3186226 7527.1.1.1 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE 0.55 47.0 3.17e-01 100.0% 84.9%
4116168 316.1.1.36 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.55 44.0 3.62e-01 90.4% 71.2%
4283560 3346.1.1.5 ↗ a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › ODR4-like 0.54 45.0 3.49e-01 96.4% 98.0%
3270655 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.54 37.0 2.66e-01 72.3% 89.8%
3533135 2492.1.1.36 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like 0.53 44.0 3.35e-01 96.4% 92.6%
3897370 3346.1.1.5 ↗ a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › ODR4-like 0.52 36.0 2.71e-01 71.1% 35.1%
3856390 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.51 44.0 3.48e-01 98.8% 89.2%
3394577 7039.1.1.1 ↗ a+b complex topology › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › PCIF1_WW 0.51 37.0 2.74e-01 100.0% 27.8%
1160800 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.51 34.0 3.59e-01 71.1% 77.3%
3646061 316.1.1.36 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.50 37.0 3.17e-01 80.7% 70.0%
D2 medium residues 84-153
PDB