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SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00288
Bact-VirSR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00288
Identity
- Kingdom:
- phage
Quality
69.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-113
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i0xG00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.77 | 46.0 | 5.72e-01 | 73.1% | 92.6% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 49.0 | 5.23e-01 | 82.7% | 100.0% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.60 | 26.0 | 3.01e-01 | 100.0% | 52.8% |
| 4egwA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.60 | 51.0 | 4.90e-01 | 92.3% | 89.9% |
| 1a1xA00 | 2.40.15.10 | Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 | 0.59 | 29.0 | 2.95e-01 | 75.0% | 45.3% |
| 3cf6E03 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.56 | 43.0 | 4.00e-01 | 89.4% | 64.9% |
| 3nvoB02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.55 | 46.0 | 4.45e-01 | 90.4% | 87.9% |
| 1mdcA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 38.0 | 3.51e-01 | 73.1% | 84.7% |
| 5tkwA02 | 3.30.420.370 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain | 0.54 | 30.0 | 3.57e-01 | 80.8% | 83.3% |
| 1o8vA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 38.0 | 3.51e-01 | 74.0% | 82.7% |
| 6eufA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 36.0 | 2.61e-01 | 74.0% | 41.9% |
| 3fy6A01 | 3.30.2210.10 | Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily | 0.50 | 37.0 | 3.67e-01 | 85.6% | 74.8% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5072037 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.73 | 44.0 | 5.31e-01 | 76.0% | 90.0% |
| 3990854 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.68 | 44.0 | 4.72e-01 | 71.2% | 75.6% |
| 3581368 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.66 | 44.0 | 3.86e-01 | 73.1% | 47.3% |
| 3723602 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.66 | 54.0 | 3.72e-01 | 87.5% | 60.3% |
| 3646439 | 192.8.1.263 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF7615 | 0.60 | 42.0 | 4.55e-01 | 75.0% | 88.2% |
| 4021885 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.58 | 49.0 | 3.74e-01 | 92.3% | 70.6% |
| 3825046 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.58 | 51.0 | 4.56e-01 | 96.2% | 82.8% |
| 3517016 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 38.0 | 2.75e-01 | 71.2% | 50.5% |
| 3250163 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 42.0 | 4.34e-01 | 83.7% | 87.4% |
| 3708732 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.55 | 38.0 | 2.68e-01 | 71.2% | 49.4% |
| 3879656 | 633.23.1.1 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin | 0.55 | 46.0 | 3.82e-01 | 92.3% | 87.6% |
| 3939474 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.54 | 38.0 | 3.42e-01 | 73.1% | 83.4% |
| 3478706 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.53 | 44.0 | 3.94e-01 | 90.4% | 70.0% |
| 4589583 | 2008.1.1.191 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_HpaII | 0.53 | 38.0 | 3.27e-01 | 75.0% | 73.4% |
| 3416404 | 5.1.4.240 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MRJP | 0.52 | 38.0 | 2.75e-01 | 78.8% | 82.8% |
| 4322675 | 220.1.1.121 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 | 0.52 | 45.0 | 4.50e-01 | 96.2% | 91.8% |
| 2029638 | 71.2.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › EipB_like | 0.51 | 39.0 | 3.04e-01 | 81.7% | 97.5% |
| 3465186 | 5.1.8.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 | 0.51 | 35.0 | 3.27e-01 | 70.2% | 90.0% |