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SR-VP_0-2_scaffold_141_2143444_prodigal-single.1__X__X__00011
Bact-VirSR-VP_0-2_scaffold_141_2143444_prodigal-single.1__X__X__00011
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 70-145
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00088__D33-109
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.86 | 80.0 | 6.36e-01 | 100.0% | 65.5% |
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.76 | 68.0 | 6.63e-01 | 97.4% | 96.4% |
| 1e7lA01 | 3.40.1800.10 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases | 0.71 | 54.0 | 5.32e-01 | 80.3% | 87.5% |
| 2y43A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.65 | 37.0 | 3.58e-01 | 71.1% | 47.7% |
| 1vq8U00 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.65 | 44.0 | 5.00e-01 | 80.3% | 100.0% |
| 3o58V00 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.64 | 45.0 | 4.92e-01 | 82.9% | 94.9% |
| 1wgfA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.61 | 30.0 | 3.43e-01 | 78.9% | 62.3% |
| 1vx7000 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.61 | 45.0 | 4.87e-01 | 82.9% | 96.8% |
| 2aw4Z00 | 4.10.830.30 | Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31 | 0.58 | 40.0 | 4.14e-01 | 71.1% | 94.3% |
| 7zj3D01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 32.0 | 3.17e-01 | 76.3% | 58.0% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 119462 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.85 | 79.0 | 6.31e-01 | 100.0% | 65.5% |
| 5070853 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.83 | 73.0 | 7.00e-01 | 94.7% | 90.6% |
| 4979945 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.81 | 74.0 | 6.21e-01 | 100.0% | 75.2% |
| 4941657 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.78 | 66.0 | 6.69e-01 | 90.8% | 100.0% |
| 4999440 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.77 | 64.0 | 6.21e-01 | 89.5% | 87.1% |
| 185780 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.77 | 71.0 | 6.49e-01 | 100.0% | 84.5% |
| 5019258 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.77 | 66.0 | 6.52e-01 | 93.4% | 100.0% |
| 5016552 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.76 | 63.0 | 5.51e-01 | 88.2% | 65.5% |
| 4946236 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.75 | 66.0 | 5.15e-01 | 97.4% | 60.6% |
| 3879791 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.75 | 64.0 | 4.53e-01 | 93.4% | 33.8% |
| 3561303 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.74 | 63.0 | 4.90e-01 | 93.4% | 46.1% |
| 2485694 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.74 | 61.0 | 5.05e-01 | 89.5% | 59.7% |
| 3397473 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.74 | 63.0 | 5.39e-01 | 93.4% | 65.0% |
| 3489023 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.74 | 62.0 | 5.35e-01 | 93.4% | 65.0% |
| 4986026 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.72 | 55.0 | 4.09e-01 | 81.6% | 36.2% |
| 3307439 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.71 | 62.0 | 5.28e-01 | 96.1% | 75.4% |
| 3249964 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.71 | 54.0 | 5.39e-01 | 81.6% | 100.0% |
| 3952892 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.70 | 61.0 | 5.22e-01 | 97.4% | 68.0% |
| 4492949 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.70 | 62.0 | 5.56e-01 | 97.4% | 81.9% |
| 4949181 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.70 | 60.0 | 6.07e-01 | 93.4% | 100.0% |
| 3952384 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.70 | 62.0 | 5.75e-01 | 98.7% | 92.6% |
| 3952776 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.70 | 55.0 | 5.87e-01 | 86.8% | 100.0% |
| 3978374 | 378.1.1.18 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF968 | 0.70 | 58.0 | 5.58e-01 | 93.4% | 81.2% |
| 4675823 | 377.1.1.3 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK | 0.69 | 53.0 | 5.66e-01 | 81.6% | 100.0% |
| 4007998 | 2004.1.1.28 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK | 0.68 | 55.0 | 4.03e-01 | 88.2% | 96.1% |
| 3976549 | 2004.1.1.28 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK | 0.68 | 56.0 | 4.03e-01 | 88.2% | 96.1% |
| 3587782 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.68 | 60.0 | 5.31e-01 | 97.4% | 75.5% |
| 4932487 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.64 | 42.0 | 4.39e-01 | 80.3% | 74.3% |
| 3499880 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.63 | 44.0 | 3.78e-01 | 88.2% | 44.8% |
| 4096542 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.63 | 43.0 | 4.87e-01 | 80.3% | 98.2% |
| 3402915 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.61 | 48.0 | 4.37e-01 | 84.2% | 98.0% |
| 2878975 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.60 | 45.0 | 4.55e-01 | 88.2% | 80.3% |
| 3224881 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.59 | 44.0 | 3.67e-01 | 88.2% | 45.2% |
| 4023822 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.59 | 43.0 | 3.51e-01 | 82.9% | 40.0% |
| 3566406 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.58 | 38.0 | 3.53e-01 | 71.1% | 53.7% |
| 3718306 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.57 | 44.0 | 3.76e-01 | 85.5% | 56.9% |
| 3562969 | 376.1.3.4 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 | 0.57 | 39.0 | 4.28e-01 | 73.7% | 90.0% |
| 3611182 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.56 | 42.0 | 4.23e-01 | 82.9% | 80.0% |
| 3419632 | 376.1.3.31 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-4CXXC_R1 | 0.56 | 41.0 | 4.35e-01 | 76.3% | 100.0% |
| 3714738 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.56 | 42.0 | 3.67e-01 | 82.9% | 53.3% |
| 3375392 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.55 | 44.0 | 4.05e-01 | 86.8% | 68.0% |
| 3244935 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.54 | 35.0 | 3.32e-01 | 71.1% | 53.7% |
| 3329244 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.53 | 38.0 | 4.16e-01 | 73.7% | 96.7% |
| 3861374 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.52 | 45.0 | 4.34e-01 | 96.1% | 89.4% |
| 3715056 | 207.1.1.24 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 | 0.51 | 39.0 | 2.85e-01 | 85.5% | 29.6% |