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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00068
Bact-VirSR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00068
Identity
- Kingdom:
- phage
Quality
90.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 20-63_91-103_149-186
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fnaA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 40.0 | 4.42e-01 | 96.8% | 98.6% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 34.0 | 3.22e-01 | 89.5% | 55.4% |
| 6wfqC01 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.51 | 45.0 | 4.01e-01 | 100.0% | 81.7% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4267105 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.60 | 34.0 | 2.56e-01 | 100.0% | 22.2% |
| 4946735 | 101.1.17.47 ↗ | alpha arrays › HTH › HTH › FF domain › tRNA-synt_1c | 0.60 | 42.0 | 4.78e-01 | 94.7% | 97.1% |
| 5035650 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.60 | 42.0 | 4.84e-01 | 95.8% | 98.6% |
| 3702489 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.55 | 38.0 | 2.80e-01 | 72.6% | 92.8% |
| 5055782 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.52 | 38.0 | 3.01e-01 | 100.0% | 35.2% |
| 5044046 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 30.0 | 3.44e-01 | 98.9% | 80.0% |
D2
medium
residues 64-90_104-148
Domain cluster:
representative