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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00082
Bact-VirSR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00082
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-86
Domain cluster:
rep: SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00193__D13-94
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3witA00 | 2.20.220.20 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › | 0.69 | 41.0 | 4.64e-01 | 71.4% | 78.1% |
| 3mwxA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.65 | 46.0 | 3.06e-01 | 73.8% | 78.3% |
| 2yfoA01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.60 | 43.0 | 2.90e-01 | 73.8% | 97.7% |
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.59 | 50.0 | 3.68e-01 | 100.0% | 42.7% |
| 1tfkA00 | 3.10.450.200 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 34.0 | 3.29e-01 | 100.0% | 53.2% |
| 4jhcB00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.56 | 45.0 | 3.54e-01 | 88.1% | 98.9% |
| 1hdhA02 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.56 | 43.0 | 4.48e-01 | 94.0% | 89.6% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.55 | 40.0 | 3.79e-01 | 95.2% | 64.6% |
| 1zxuA00 | 2.40.160.200 | Mainly Beta › Beta Barrel › Porin › LURP1-related | 0.55 | 49.0 | 3.96e-01 | 100.0% | 84.0% |
| 3mi6A01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.54 | 44.0 | 3.07e-01 | 91.7% | 61.8% |
| 4u7aA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 45.0 | 3.08e-01 | 100.0% | 86.5% |
| 3buuB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.53 | 47.0 | 3.47e-01 | 100.0% | 38.6% |
| 5f7uA02 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.53 | 43.0 | 3.22e-01 | 91.7% | 93.8% |
| 5bpdA02 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.53 | 40.0 | 3.39e-01 | 82.1% | 77.6% |
| 4o4oA00 | 2.40.128.590 | Mainly Beta › Beta Barrel › Lipocalin › CpcT/CpeT domain | 0.52 | 46.0 | 3.52e-01 | 97.6% | 85.8% |
| 1v7wA01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.52 | 42.0 | 2.97e-01 | 91.7% | 95.7% |
| 6grrB01 | 3.30.457.10 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain | 0.51 | 36.0 | 3.76e-01 | 72.6% | 82.3% |
| 8cukB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 44.0 | 2.99e-01 | 97.6% | 84.3% |
| 5b4wA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 41.0 | 2.70e-01 | 91.7% | 56.5% |
| 2dg1C00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.50 | 42.0 | 2.99e-01 | 100.0% | 56.2% |
| 2jv8A00 | 3.30.1880.10 | Alpha Beta › 2-Layer Sandwich › protein ne1242 fold › protein ne1242 domain like | 0.50 | 34.0 | 3.60e-01 | 92.9% | 82.2% |
| 2ghsA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.50 | 42.0 | 3.03e-01 | 100.0% | 87.5% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4422293 | 4959.1.1.0 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit | 0.80 | 38.0 | 3.26e-01 | 72.6% | 32.3% |
| 3210934 | 77.3.1.7 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF31062 | 0.78 | 48.0 | 4.41e-01 | 71.4% | 49.5% |
| 4200872 | 4959.1.1.1 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 | 0.77 | 37.0 | 3.27e-01 | 72.6% | 34.8% |
| 3617898 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.76 | 46.0 | 3.74e-01 | 70.2% | 35.2% |
| 3939513 | 633.23.1.5 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like | 0.68 | 45.0 | 3.17e-01 | 100.0% | 22.0% |
| 3614189 | 5.1.4.19 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Coatomer_WDAD | 0.63 | 40.0 | 2.79e-01 | 100.0% | 20.4% |
| 4347651 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.62 | 56.0 | 4.30e-01 | 100.0% | 45.9% |
| 3984133 | 3735.1.1.12 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell | 0.58 | 43.0 | 2.47e-01 | 81.0% | 9.2% |
| 3263745 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.57 | 52.0 | 4.15e-01 | 100.0% | 56.1% |
| 3960750 | 6.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil | 0.57 | 39.0 | 3.45e-01 | 100.0% | 50.0% |
| 3818015 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.57 | 50.0 | 3.89e-01 | 100.0% | 75.8% |
| 3511507 | 9.1.1.49 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 | 0.55 | 49.0 | 4.38e-01 | 97.6% | 85.6% |
| 3997759 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 44.0 | 2.86e-01 | 91.7% | 61.0% |
| 3781621 | 5.1.4.19 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Coatomer_WDAD | 0.54 | 46.0 | 3.32e-01 | 100.0% | 46.9% |
| 5045767 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.54 | 35.0 | 3.43e-01 | 86.9% | 60.0% |
| 4949536 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 44.0 | 3.02e-01 | 97.6% | 70.1% |
| 3165249 | 241.7.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N | 0.53 | 39.0 | 3.62e-01 | 79.8% | 90.9% |
| 3850814 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.52 | 44.0 | 2.80e-01 | 95.2% | 77.4% |
| 3616213 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.52 | 43.0 | 3.16e-01 | 100.0% | 84.0% |
| 3927181 | 5.1.4.377 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_TULP_N | 0.51 | 44.0 | 2.94e-01 | 100.0% | 59.7% |
| 3643255 | 5.1.4.222 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta_prop_At2g24240 | 0.51 | 44.0 | 2.99e-01 | 100.0% | 37.4% |
| 3579989 | 5.1.4.116 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 | 0.51 | 41.0 | 2.77e-01 | 90.5% | 29.4% |
| 3823729 | 5.1.4.222 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta_prop_At2g24240 | 0.51 | 43.0 | 2.93e-01 | 100.0% | 44.2% |
| 3369627 | 5.1.4.226 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7899 | 0.50 | 41.0 | 2.63e-01 | 90.5% | 29.3% |
| 3478678 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 40.0 | 4.20e-01 | 96.4% | 93.3% |
| 5009633 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 46.0 | 4.48e-01 | 100.0% | 91.1% |
| 3788044 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.50 | 42.0 | 3.19e-01 | 100.0% | 76.2% |