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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00086

Bact-Vir

SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00086

Identity

Kingdom:
phage

Quality

53.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-125
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18760.8 best ART-PolyVal 42.2 1.90e-10 89.6% 88.6%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gv2A02 3.90.228.10 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.76 66.0 5.42e-01 91.2% 71.4%
2rf5A00 3.90.228.10 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.76 67.0 5.56e-01 93.6% 60.9%
3oi8A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.62 30.0 3.42e-01 71.2% 60.4%
4k6lG00 3.90.210.10 Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A 0.62 52.0 4.21e-01 88.8% 56.7%
2auaA01 3.20.170.10 Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › ADP-ribosylation domain 0.62 45.0 4.79e-01 91.2% 87.0%
3tfiA00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.51 41.0 2.97e-01 87.2% 61.2%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3905755 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.84 73.0 7.21e-01 90.4% 95.4%
3602129 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.83 73.0 6.62e-01 92.8% 87.1%
2495192 237.1.1.11 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › RES 0.79 67.0 6.12e-01 89.6% 90.6%
2512677 237.1.1.11 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › RES 0.78 69.0 5.98e-01 94.4% 83.1%
3295358 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.75 68.0 5.31e-01 94.4% 57.9%
3483050 237.1.1.18 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF3715 0.75 65.0 5.30e-01 93.6% 66.5%
3254451 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.72 65.0 5.34e-01 95.2% 57.7%
3711853 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.68 58.0 4.99e-01 92.0% 59.5%
3176205 237.1.1.37 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PF27671 0.66 61.0 4.85e-01 100.0% 65.0%
3193504 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.65 55.0 5.26e-01 88.8% 90.0%
3597511 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.65 56.0 4.80e-01 92.0% 67.2%
4029680 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.65 56.0 4.95e-01 92.0% 65.1%
4995698 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.62 46.0 5.09e-01 88.0% 95.0%
4182855 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.62 28.0 3.70e-01 95.2% 78.5%
4941413 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.57 28.0 3.47e-01 99.2% 74.7%
4991792 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 29.0 3.55e-01 76.0% 98.6%
D2 medium residues 128-197
PDB
D3 medium residues 249-351
PDB