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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00101
Bact-VirSR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00101
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-102
Domain cluster:
rep: IMGVR_UViG_3300025146_000547-3300025146-Ga0209322_100025828__D6-124
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24963.2 best | DUF7768 | 117.4 | 4.20e-34 | 100.0% | 99.0% |
D2
high
residues 112-162
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 40.0 | 3.90e-01 | 92.2% | 61.7% |
| 5iz3A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.57 | 45.0 | 3.18e-01 | 90.2% | 92.0% |
| 1gwiA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.51 | 43.0 | 2.61e-01 | 100.0% | 32.1% |
| 4inaA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 41.0 | 2.90e-01 | 100.0% | 40.1% |
| 6b8sA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 37.0 | 2.27e-01 | 88.2% | 11.9% |
| 7dklA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 44.0 | 3.68e-01 | 100.0% | 75.6% |
| 4zxgA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 40.0 | 3.43e-01 | 88.2% | 75.9% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 38.0 | 3.08e-01 | 84.3% | 39.4% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3177946 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.57 | 40.0 | 3.58e-01 | 82.4% | 52.0% |
| 3577550 | 4268.2.1.10 ↗ | alpha duplicates or obligate multimers › EspA/CesA-like › EspA chaperone CesA › EspA chaperone CesA › NUCB1_N | 0.56 | 43.0 | 3.21e-01 | 86.3% | 69.3% |
| 3561887 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.56 | 47.0 | 4.04e-01 | 98.0% | 60.0% |
| 3602833 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.54 | 44.0 | 2.84e-01 | 100.0% | 89.3% |
| 4024346 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.53 | 44.0 | 2.94e-01 | 100.0% | 43.3% |
| 3596846 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.53 | 39.0 | 2.99e-01 | 86.3% | 33.8% |
| 5035493 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.53 | 39.0 | 3.21e-01 | 84.3% | 41.0% |
| 3763164 | 101.1.2.12 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEP | 0.52 | 43.0 | 3.65e-01 | 100.0% | 90.5% |
| 3947868 | 2484.1.1.87 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MreB-like_C | 0.52 | 39.0 | 2.82e-01 | 96.1% | 26.7% |
| 3700673 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 43.0 | 3.07e-01 | 100.0% | 44.7% |
| 4928315 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.51 | 38.0 | 3.45e-01 | 86.3% | 57.3% |
| 4389819 | 101.1.1.8 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › TEA | 0.51 | 43.0 | 3.50e-01 | 100.0% | 52.4% |
| 3506058 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.51 | 39.0 | 3.20e-01 | 86.3% | 64.0% |
| 4104885 | 3001.1.1.1 ↗ | alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 | 0.51 | 44.0 | 3.62e-01 | 100.0% | 60.0% |
| 4381440 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.51 | 37.0 | 3.01e-01 | 84.3% | 37.4% |
| 5032186 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.51 | 40.0 | 3.62e-01 | 92.2% | 73.3% |
| 4562641 | 131.1.1.7 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HDOD | 0.50 | 40.0 | 2.85e-01 | 100.0% | 49.0% |
| 4178886 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.50 | 37.0 | 3.13e-01 | 86.3% | 51.0% |