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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00103
Bact-VirSR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00103
Identity
- Kingdom:
- phage
Quality
64.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-82
Domain cluster:
rep: OP620778.1__WGN97696.1__X__00282__D9-53
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bm0A03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.68 | 27.0 | 3.04e-01 | 71.9% | 43.1% |
| 3ibvB00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.58 | 39.0 | 2.16e-01 | 70.3% | 12.3% |
| 5d8nA01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.54 | 32.0 | 2.29e-01 | 79.7% | 20.7% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.53 | 39.0 | 3.37e-01 | 81.2% | 68.8% |
| 2g0iA00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.53 | 43.0 | 3.55e-01 | 87.5% | 51.4% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 38.0 | 3.19e-01 | 75.0% | 52.8% |
| 1d4cA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 44.0 | 2.89e-01 | 100.0% | 20.5% |
| 3h51A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 37.0 | 2.91e-01 | 75.0% | 40.1% |
| 3en8A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 39.0 | 3.24e-01 | 81.2% | 97.3% |
| 2kkhA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 35.0 | 3.41e-01 | 85.9% | 64.0% |
| 1p4xA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 41.0 | 3.34e-01 | 92.2% | 89.8% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4386701 | 310.2.1.35 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › PF28954 | 0.62 | 39.0 | 2.97e-01 | 98.4% | 28.3% |
| 3236416 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.61 | 54.0 | 3.38e-01 | 100.0% | 86.4% |
| 3874464 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.61 | 44.0 | 2.72e-01 | 76.6% | 57.7% |
| 4956296 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.60 | 42.0 | 2.90e-01 | 75.0% | 63.6% |
| 4442629 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.58 | 42.0 | 2.80e-01 | 76.6% | 31.1% |
| 3227090 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.57 | 40.0 | 2.94e-01 | 73.4% | 77.1% |
| 4645555 | 4203.1.1.1 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 | 0.56 | 24.0 | 2.71e-01 | 73.4% | 48.0% |
| 4989412 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.55 | 48.0 | 3.30e-01 | 100.0% | 82.9% |
| 3181298 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 42.0 | 3.47e-01 | 95.3% | 46.1% |
| 2760350 | 109.2.1.14 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › DUF608 | 0.55 | 37.0 | 2.38e-01 | 71.9% | 20.0% |
| 4083451 | 192.2.1.20 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ASNSD1-SEP | 0.55 | 37.0 | 3.45e-01 | 73.4% | 56.2% |
| 4054285 | 5.1.4.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 | 0.55 | 42.0 | 2.49e-01 | 82.8% | 81.4% |
| 4618205 | 604.1.1.150 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 | 0.55 | 38.0 | 3.16e-01 | 75.0% | 95.0% |
| 3176989 | 601.19.1.40 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PF28954 | 0.54 | 39.0 | 2.94e-01 | 76.6% | 76.2% |
| 3935332 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.54 | 37.0 | 3.02e-01 | 73.4% | 36.2% |
| 4994376 | 3457.1.1.3 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II | 0.54 | 38.0 | 2.59e-01 | 75.0% | 90.8% |
| 4244236 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.53 | 45.0 | 3.84e-01 | 96.9% | 68.2% |
| 5011884 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.53 | 38.0 | 2.58e-01 | 76.6% | 30.8% |
| 4158903 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.53 | 45.0 | 3.77e-01 | 96.9% | 67.8% |
| 3482328 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.53 | 37.0 | 3.15e-01 | 73.4% | 52.4% |
| 1000517 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.53 | 38.0 | 3.25e-01 | 75.0% | 55.4% |
| 4494181 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.52 | 36.0 | 2.74e-01 | 73.4% | 31.7% |
| 1391059 | 2003.1.2.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2 | 0.52 | 44.0 | 3.03e-01 | 100.0% | 25.6% |
| 4027087 | 304.151.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | 0.52 | 42.0 | 4.00e-01 | 96.9% | 75.0% |
| None | — | 0.52 | 43.0 | 2.85e-01 | 100.0% | 20.6% | |
| 3586018 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.52 | 37.0 | 2.84e-01 | 75.0% | 39.3% |
| 3479726 | 304.151.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | 0.51 | 41.0 | 3.71e-01 | 90.6% | 65.6% |
| 3776020 | 386.1.1.19 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_2 | 0.51 | 40.0 | 2.61e-01 | 87.5% | 23.1% |
| 3470182 | 5054.1.1.63 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, YVC1_C | 0.51 | 36.0 | 2.21e-01 | 75.0% | 45.3% |
| 5083762 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.51 | 42.0 | 2.90e-01 | 100.0% | 90.2% |
| 3716713 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.51 | 27.0 | 3.06e-01 | 70.3% | 64.0% |
| 3938271 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.50 | 41.0 | 2.71e-01 | 96.9% | 91.7% |
D2
high
residues 108-177