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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00112
Bact-VirSR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00112
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 49-251
Domain cluster:
rep: 04302015_21_scaffold_10_prodigal-single.1__X__X__00288__D73-232
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zpaA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 47.0 | 5.69e-01 | 79.8% | 91.2% |
| 1w4rA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 45.0 | 5.42e-01 | 79.8% | 99.2% |
| 1c4oA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 49.0 | 5.59e-01 | 90.1% | 98.7% |
| 2z0mA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 55.0 | 5.73e-01 | 90.6% | 97.4% |
| 2b8tA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 43.0 | 5.11e-01 | 79.8% | 99.3% |
| 4b3fX01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 55.0 | 4.62e-01 | 91.1% | 76.9% |
| 2cb0A01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.63 | 37.0 | 4.13e-01 | 88.2% | 72.2% |
| 3ke8A01 | 3.40.1010.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain | 0.60 | 35.0 | 4.45e-01 | 80.3% | 99.1% |
| 3cz5C00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 40.0 | 4.66e-01 | 72.9% | 99.3% |
| 2wb4B01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 43.0 | 3.82e-01 | 85.7% | 56.4% |
| 1qz9A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.57 | 46.0 | 4.26e-01 | 85.7% | 82.8% |
| 1wqaA03 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.56 | 27.0 | 3.64e-01 | 76.4% | 89.6% |
| 3a7eA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 47.0 | 4.72e-01 | 93.1% | 86.8% |
| 2hnkA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 48.0 | 4.61e-01 | 91.1% | 86.5% |
| 3tkaA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 46.0 | 4.79e-01 | 90.6% | 94.6% |
| 2bwnA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.56 | 49.0 | 4.65e-01 | 93.1% | 91.9% |
| 3wy7A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.56 | 49.0 | 4.64e-01 | 93.1% | 91.5% |
| 3gdgA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 45.0 | 4.09e-01 | 85.7% | 95.5% |
| 1bs0A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.55 | 47.0 | 4.57e-01 | 91.6% | 92.1% |
| 8k1fC01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 45.0 | 4.61e-01 | 87.2% | 92.9% |
| 3a2bA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.55 | 48.0 | 4.60e-01 | 93.6% | 91.5% |
| 2aeuA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.54 | 46.0 | 4.54e-01 | 89.7% | 91.2% |
| 4pcaB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 46.0 | 4.49e-01 | 91.1% | 86.7% |
| 2ctzA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.54 | 46.0 | 4.06e-01 | 89.7% | 81.4% |
| 4iw7A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.54 | 47.0 | 4.55e-01 | 91.6% | 90.9% |
| 2xciC01 | 3.40.50.11720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 3-Deoxy-D-manno-octulosonic-acid transferase, N-terminal domain | 0.53 | 37.0 | 4.06e-01 | 79.3% | 85.5% |
| 3duwA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 47.0 | 4.60e-01 | 94.6% | 89.5% |
| 3ftbA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.53 | 45.0 | 4.44e-01 | 90.1% | 90.5% |
| 3ffhB02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.53 | 45.0 | 4.50e-01 | 90.1% | 96.7% |
| 4j8lA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.53 | 46.0 | 4.32e-01 | 92.6% | 81.2% |
| 2avdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 45.0 | 4.45e-01 | 93.1% | 86.8% |
| 7sglD01 | 3.40.50.12650 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 35.0 | 4.16e-01 | 87.2% | 100.0% |
| 1krhA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.52 | 34.0 | 4.02e-01 | 88.2% | 100.0% |
| 2rh8A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 42.0 | 3.64e-01 | 85.7% | 89.4% |
| 3nbkD00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 31.0 | 3.43e-01 | 81.3% | 73.0% |
| 5ib9A02 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.51 | 27.0 | 3.30e-01 | 81.8% | 78.7% |
| 5b1yA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 40.0 | 3.83e-01 | 81.8% | 97.0% |
| 2jl1A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 39.0 | 4.20e-01 | 80.3% | 97.1% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3615886 | 2004.1.1.23 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom | 0.74 | 64.0 | 5.93e-01 | 91.6% | 86.7% |
| 3642135 | 2004.1.1.23 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom | 0.74 | 64.0 | 5.80e-01 | 92.1% | 90.7% |
| 3273397 | 2004.1.1.629 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, ResIII | 0.71 | 63.0 | 4.36e-01 | 93.6% | 79.8% |
| 3270781 | 2004.1.1.23 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom | 0.71 | 61.0 | 5.29e-01 | 91.1% | 92.2% |
| 4017599 | 109.4.1.2623 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNF2-rel_dom | 0.71 | 61.0 | 3.93e-01 | 91.1% | 26.7% |
| 3163557 | 2004.1.1.123 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_RecD | 0.69 | 59.0 | 6.16e-01 | 95.6% | 97.3% |
| 4953117 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.69 | 56.0 | 6.02e-01 | 89.7% | 97.1% |
| 3943909 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.68 | 37.0 | 4.62e-01 | 82.8% | 83.1% |
| 5083310 | 2007.6.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS | 0.68 | 42.0 | 4.46e-01 | 88.7% | 69.1% |
| 4291338 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.66 | 37.0 | 4.45e-01 | 80.3% | 79.3% |
| 5068337 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.66 | 53.0 | 4.96e-01 | 95.1% | 69.3% |
| 5067697 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 57.0 | 5.94e-01 | 91.1% | 100.0% |
| 3977337 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.65 | 37.0 | 4.48e-01 | 84.2% | 83.0% |
| 5023835 | 7574.1.1.0 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) | 0.65 | 43.0 | 4.70e-01 | 90.1% | 78.8% |
| 5078032 | 2004.1.1.343 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 | 0.65 | 47.0 | 4.51e-01 | 90.6% | 64.7% |
| 5059467 | 2004.1.1.343 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 | 0.64 | 48.0 | 4.41e-01 | 90.6% | 60.4% |
| 4571284 | 7588.1.1.1 ↗ | a/b three-layered sandwiches › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › LYTB | 0.64 | 37.0 | 4.76e-01 | 80.8% | 100.0% |
| 5077254 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.63 | 54.0 | 4.03e-01 | 90.1% | 42.1% |
| 5061376 | 2004.1.1.1200 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF835 | 0.63 | 50.0 | 5.45e-01 | 88.2% | 99.4% |
| 5054345 | 2007.6.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS | 0.63 | 39.0 | 4.18e-01 | 94.1% | 69.4% |
| 5043009 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.63 | 54.0 | 4.00e-01 | 90.1% | 41.2% |
| 4032610 | 2004.1.1.238 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C,ResIII | 0.61 | 52.0 | 3.98e-01 | 90.1% | 48.8% |
| 4422870 | 7588.1.1.1 ↗ | a/b three-layered sandwiches › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › LYTB | 0.61 | 35.0 | 4.19e-01 | 82.3% | 83.6% |
| 3405160 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.61 | 45.0 | 4.94e-01 | 75.9% | 95.2% |
| 3383144 | 7573.1.1.0 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like | 0.60 | 40.0 | 4.65e-01 | 91.1% | 93.8% |
| 3284101 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.60 | 40.0 | 4.78e-01 | 72.4% | 100.0% |
| 3279620 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.60 | 41.0 | 4.84e-01 | 72.4% | 100.0% |
| 4478197 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.60 | 54.0 | 4.06e-01 | 97.0% | 76.2% |
| 3595906 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 46.0 | 4.02e-01 | 100.0% | 53.4% |
| 3717094 | 2004.1.1.28 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK | 0.59 | 48.0 | 4.62e-01 | 83.7% | 77.8% |
| 4588727 | 2007.6.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS | 0.59 | 41.0 | 4.26e-01 | 89.7% | 74.7% |
| 3284801 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.59 | 39.0 | 4.70e-01 | 72.4% | 100.0% |
| 4484944 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.59 | 39.0 | 4.71e-01 | 71.9% | 100.0% |
| 3970655 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.59 | 40.0 | 4.73e-01 | 72.9% | 97.9% |
| 3973832 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.58 | 39.0 | 4.65e-01 | 89.2% | 100.0% |
| 3969138 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.57 | 39.0 | 4.60e-01 | 75.9% | 99.3% |
| 3285572 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.57 | 39.0 | 4.45e-01 | 75.4% | 91.0% |
| 3970296 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.57 | 37.0 | 4.50e-01 | 76.4% | 98.5% |
| 5071356 | 2005.1.1.14 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct | 0.57 | 40.0 | 4.46e-01 | 85.7% | 92.9% |
| 4009509 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.57 | 41.0 | 4.69e-01 | 75.9% | 100.0% |
| 3487184 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.56 | 42.0 | 4.64e-01 | 76.4% | 93.9% |
| 5071530 | 2003.1.5.14 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 | 0.56 | 45.0 | 4.78e-01 | 92.6% | 94.0% |
| 4961220 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.55 | 35.0 | 4.09e-01 | 80.3% | 89.7% |
| None | — | 0.55 | 47.0 | 4.50e-01 | 91.1% | 87.4% | |
| 1312123 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.54 | 45.0 | 4.57e-01 | 91.1% | 88.7% |
| 4355806 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.54 | 39.0 | 4.47e-01 | 76.8% | 100.0% |
| 4162847 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.53 | 44.0 | 4.67e-01 | 87.7% | 97.2% |
| 3917203 | 2003.1.5.14 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 | 0.53 | 45.0 | 4.16e-01 | 92.6% | 75.9% |
| 4186244 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.51 | 45.0 | 4.33e-01 | 100.0% | 82.1% |