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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00200

Bact-Vir

SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00200

Identity

Kingdom:
phage

Quality

85.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-53
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.95 88.0 5.62e-01 98.0% 25.0%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.95 87.0 8.05e-01 98.0% 80.6%
2gd5A00 6.10.140.1230 Special › Helix non-globular › Helix Hairpins › 0.92 85.0 5.99e-01 100.0% 37.3%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.92 84.0 5.47e-01 100.0% 25.8%
2v0xA01 1.10.287.3160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.91 84.0 5.64e-01 100.0% 53.6%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.91 83.0 6.38e-01 100.0% 58.5%
1rq0A01 6.10.140.160 Special › Helix non-globular › Helix Hairpins › 0.90 83.0 6.95e-01 100.0% 65.1%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.90 80.0 6.49e-01 100.0% 54.9%
3pt1A02 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.88 80.0 5.93e-01 100.0% 44.2%
4adzA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.87 75.0 6.18e-01 96.1% 57.8%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.87 78.0 4.62e-01 100.0% 15.1%
2jdiG01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.87 63.0 5.91e-01 98.0% 63.9%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.87 77.0 6.10e-01 100.0% 67.6%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.86 78.0 7.43e-01 98.0% 86.2%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.86 71.0 7.24e-01 88.2% 100.0%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.86 73.0 6.79e-01 100.0% 75.0%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.86 74.0 6.47e-01 98.0% 64.9%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.86 68.0 6.00e-01 98.0% 59.5%
4abxA02 6.10.140.1090 Special › Helix non-globular › Helix Hairpins › 0.86 75.0 6.25e-01 98.0% 71.3%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.85 77.0 7.14e-01 100.0% 81.2%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.85 75.0 6.44e-01 100.0% 67.9%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.85 75.0 7.09e-01 100.0% 82.0%
2fb5A01 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.85 76.0 6.74e-01 100.0% 72.2%
4oe8C00 1.10.8.1170 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.83 74.0 6.12e-01 98.0% 58.6%
3h1nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.83 73.0 5.53e-01 100.0% 52.5%
3zdmB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.82 67.0 6.85e-01 92.2% 90.0%
3qf7A02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.82 75.0 6.97e-01 100.0% 81.0%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.82 71.0 5.05e-01 98.0% 34.0%
4ehsA00 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.82 67.0 5.00e-01 90.2% 42.7%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.81 70.0 6.08e-01 96.1% 69.2%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.81 70.0 5.46e-01 98.0% 60.9%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 71.0 5.37e-01 100.0% 43.4%
1t7sA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.80 68.0 5.14e-01 100.0% 50.4%
3k29A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.79 67.0 4.80e-01 100.0% 33.5%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 67.0 5.48e-01 100.0% 55.1%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.78 64.0 5.48e-01 92.2% 58.2%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.77 65.0 6.26e-01 100.0% 82.8%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 65.0 5.97e-01 98.0% 91.0%
2dw4A03 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.76 62.0 5.16e-01 100.0% 79.2%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 61.0 5.44e-01 96.1% 63.2%
3ck6C02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.74 63.0 4.88e-01 100.0% 44.5%
2kkmA01 1.20.1440.170 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Translation machinery-associated protein 16-like 0.71 60.0 4.51e-01 94.1% 42.4%
1bhaA00 1.10.287.170 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 60.0 5.49e-01 100.0% 71.6%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.70 59.0 5.17e-01 96.1% 63.2%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 60.0 4.82e-01 100.0% 47.7%
2db7A01 6.10.250.980 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.70 60.0 5.95e-01 100.0% 94.3%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.69 57.0 4.92e-01 100.0% 93.2%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.69 55.0 5.05e-01 94.1% 67.6%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.69 60.0 3.81e-01 100.0% 22.5%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 55.0 4.95e-01 100.0% 65.8%
4jvyB00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.68 51.0 3.52e-01 84.3% 89.5%
4l8jA04 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 56.0 5.45e-01 100.0% 91.5%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.67 60.0 5.03e-01 100.0% 60.0%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.66 54.0 5.25e-01 100.0% 90.0%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.66 52.0 4.54e-01 92.2% 58.8%
2x6hA03 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.61 50.0 3.47e-01 98.0% 42.5%
2i76A02 1.10.1040.20 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › ProC-like, C-terminal domain 0.61 48.0 3.90e-01 90.2% 44.2%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
227631 3282.1.1.1 ↗ a+b complex topology › LidA › LidA › LidA › LidA_Long_CC 0.95 88.0 5.14e-01 98.0% 14.9%
4776699 3282.1.1.1 ↗ a+b complex topology › LidA › LidA › LidA › LidA_Long_CC 0.95 87.0 5.63e-01 98.0% 26.0%
3609424 109.4.1.1407 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG, SCD, HEAT_SCC3-SA 0.95 88.0 4.70e-01 100.0% 5.3%
4949863 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.94 87.0 7.49e-01 100.0% 69.3%
3602213 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.93 86.0 6.03e-01 100.0% 35.9%
3471215 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.93 86.0 7.43e-01 100.0% 68.0%
3436926 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.93 85.0 7.41e-01 100.0% 68.9%
3699282 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.93 80.0 6.57e-01 92.2% 55.3%
3598197 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.92 81.0 4.81e-01 100.0% 15.0%
3218199 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.92 85.0 6.91e-01 100.0% 56.7%
3491738 632.8.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 0.92 84.0 6.62e-01 100.0% 51.5%
4028368 109.40.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain 0.92 85.0 5.83e-01 100.0% 52.3%
3253283 192.5.1.14 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.92 84.0 6.69e-01 100.0% 53.7%
3925075 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.91 75.0 6.65e-01 88.2% 64.3%
3249849 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.91 84.0 6.35e-01 100.0% 47.3%
3223800 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.91 83.0 5.73e-01 100.0% 33.5%
4146694 192.29.1.277 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Dynamitin 0.90 83.0 7.62e-01 100.0% 78.5%
3594586 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.90 82.0 6.58e-01 100.0% 53.7%
3990182 3922.1.1.226 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Fy-3 0.90 81.0 6.10e-01 100.0% 44.3%
4349607 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.89 81.0 6.21e-01 100.0% 47.3%
3192393 2004.1.1.430 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn 0.89 82.0 4.55e-01 100.0% 8.8%
3982740 5086.1.1.190 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP 0.89 80.0 5.24e-01 100.0% 29.0%
3877612 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.89 79.0 5.74e-01 100.0% 37.8%
2456957 192.13.1.1 ↗ alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like › Isy1 0.88 78.0 7.60e-01 98.0% 87.5%
3957419 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.88 80.0 6.94e-01 100.0% 68.0%
4667859 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.88 79.0 6.01e-01 100.0% 56.5%
3841109 192.29.1.293 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › SHCBP_N 0.88 80.0 6.31e-01 100.0% 51.0%
3967403 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.87 79.0 7.28e-01 100.0% 80.0%
4396464 605.1.1.305 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Exonuc_VII_S 0.86 73.0 6.88e-01 92.2% 78.3%
3348106 5076.2.1.10 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › PF29520 0.85 76.0 4.73e-01 100.0% 19.3%
3714244 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.85 77.0 7.32e-01 100.0% 86.7%
3236340 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.85 75.0 5.17e-01 100.0% 45.9%
3869913 2004.1.1.442 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.85 77.0 4.41e-01 100.0% 11.7%
4030667 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.83 68.0 5.68e-01 100.0% 52.2%
4140524 604.11.1.1 ↗ alpha bundles › Spectrin repeat-like › XseB-like › XseB-like › Exonuc_VII_S 0.83 69.0 6.51e-01 90.2% 76.7%
3632076 109.4.1.150 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ufd2P_core 0.82 71.0 3.83e-01 100.0% 5.8%
4937014 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.81 74.0 4.32e-01 100.0% 25.8%
3687279 109.4.1.150 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ufd2P_core 0.81 70.0 3.79e-01 100.0% 6.1%
3988020 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.80 73.0 6.71e-01 100.0% 83.1%
3580316 4082.1.1.0 ↗ alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain 0.80 63.0 6.52e-01 90.2% 100.0%
3807124 2004.1.1.430 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn 0.80 69.0 3.86e-01 100.0% 8.7%
3415405 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.79 69.0 3.99e-01 100.0% 11.5%
3931107 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.79 69.0 5.16e-01 100.0% 40.0%
3973636 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.71 58.0 5.28e-01 100.0% 86.7%
3175611 3755.3.1.361 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › MIS13 0.68 55.0 5.12e-01 98.0% 71.4%
3473827 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.66 53.0 5.19e-01 100.0% 91.7%