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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00227

Bact-Vir

SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00227

Identity

Kingdom:
phage

Quality

55.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-68
PDB
Domain cluster: rep: PH2015_22_scaffold_1_prodigal-single.1__X__X__00062__D5-65
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sp8C02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 40.0 2.85e-01 76.6% 73.5%
3e9mB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 38.0 2.77e-01 81.2% 86.9%
2g1pA02 1.10.1020.10 Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 0.51 44.0 3.88e-01 100.0% 88.0%
1q45A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 44.0 2.79e-01 100.0% 79.5%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932084 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.62 27.0 3.09e-01 79.7% 50.0%
3335794 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 47.0 3.30e-01 100.0% 67.2%
4934021 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 2.80e-01 79.7% 37.5%
3390558 398.1.1.0 ↗ few secondary structure elements › Btk/CHORD zinc fingers › Btk/CHORD zinc fingers › Btk/CHORD zinc fingers 0.50 41.0 3.10e-01 98.4% 45.3%
None — 0.50 36.0 2.46e-01 79.7% 47.3%
D2 high residues 79-180
PDB