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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00242
Bact-VirSR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00242
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-88
Domain cluster:
rep: MN270266.1__QGJ85858.1__X__00053__D136-224
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.81 | 51.0 | 6.03e-01 | 76.7% | 93.2% |
| 6bogA02 | 2.30.30.930 | Mainly Beta › Roll › SH3 type barrels. › | 0.80 | 49.0 | 5.82e-01 | 80.2% | 90.0% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.80 | 50.0 | 6.04e-01 | 86.0% | 98.2% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 51.0 | 5.95e-01 | 72.1% | 93.5% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 57.0 | 6.46e-01 | 86.0% | 100.0% |
| 4qqgG00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 58.0 | 6.32e-01 | 86.0% | 94.4% |
| 2efiA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 54.0 | 5.16e-01 | 88.4% | 63.0% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.75 | 53.0 | 6.14e-01 | 80.2% | 100.0% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 55.0 | 5.86e-01 | 82.6% | 86.8% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 51.0 | 5.79e-01 | 86.0% | 98.4% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 50.0 | 5.50e-01 | 75.6% | 85.9% |
| 2l3rA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 54.0 | 5.79e-01 | 87.2% | 94.5% |
| 3askA02 | 2.30.30.1150 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 54.0 | 4.41e-01 | 87.2% | 45.7% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 50.0 | 5.38e-01 | 75.6% | 87.5% |
| 2f5tX02 | 2.30.30.690 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 58.0 | 5.71e-01 | 88.4% | 91.1% |
| 1jegA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.67 | 45.0 | 5.32e-01 | 70.9% | 100.0% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 40.0 | 4.74e-01 | 72.1% | 92.7% |
| 1m9sA04 | 2.30.30.170 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 47.0 | 4.74e-01 | 74.4% | 88.4% |
| 7xpkA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.66 | 53.0 | 4.37e-01 | 84.9% | 63.4% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 49.0 | 5.12e-01 | 88.4% | 89.6% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 38.0 | 4.50e-01 | 72.1% | 87.9% |
| 4epcA02 | 2.30.30.170 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 47.0 | 5.11e-01 | 76.7% | 98.6% |
| 2kxcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 44.0 | 4.84e-01 | 73.3% | 92.5% |
| 3pieC09 | 2.30.30.750 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 56.0 | 5.35e-01 | 97.7% | 84.8% |
| 2vknA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 43.0 | 4.89e-01 | 76.7% | 95.5% |
| 4mb7A01 | 3.20.190.10 | Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal | 0.60 | 50.0 | 4.43e-01 | 93.0% | 75.4% |
| 2rceA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 43.0 | 4.02e-01 | 93.0% | 61.3% |
| 1s9cC01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.59 | 41.0 | 3.47e-01 | 73.3% | 93.8% |
| 1vwxA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 45.0 | 4.72e-01 | 87.2% | 96.2% |
| 3c96A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 41.0 | 3.37e-01 | 79.1% | 92.3% |
| 2b2cA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.54 | 35.0 | 4.01e-01 | 77.9% | 90.6% |
| 3nixB00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 39.0 | 2.59e-01 | 79.1% | 71.2% |
| 4esqA00 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.53 | 39.0 | 3.05e-01 | 82.6% | 35.1% |
| 2hqvA00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.53 | 45.0 | 3.75e-01 | 100.0% | 67.4% |
| 1wczA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 45.0 | 4.13e-01 | 95.3% | 87.0% |
| 3cp7B02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 38.0 | 3.66e-01 | 90.7% | 65.7% |
| 2rqrA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 45.0 | 3.99e-01 | 95.3% | 79.8% |
| 3qooA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 36.0 | 3.18e-01 | 75.6% | 86.6% |
| 1y0gA00 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.50 | 44.0 | 3.54e-01 | 96.5% | 78.1% |
ECOD (76)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3174977 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.88 | 53.0 | 5.13e-01 | 81.4% | 55.8% |
| 4071917 | 4.1.1.111 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_RapA | 0.85 | 49.0 | 6.35e-01 | 83.7% | 100.0% |
| 2727964 | 4.1.1.105 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5604 | 0.85 | 55.0 | 6.49e-01 | 81.4% | 96.6% |
| 3855038 | 4.1.1.105 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5604 | 0.83 | 54.0 | 4.32e-01 | 80.2% | 35.6% |
| 5052257 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 49.0 | 5.84e-01 | 74.4% | 86.7% |
| 4966163 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 54.0 | 5.75e-01 | 86.0% | 77.3% |
| 4161673 | 4.1.1.105 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5604 | 0.81 | 55.0 | 5.59e-01 | 83.7% | 70.6% |
| 4284709 | 4.1.1.111 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_RapA | 0.80 | 50.0 | 6.12e-01 | 84.9% | 98.2% |
| 3570368 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.80 | 55.0 | 5.20e-01 | 87.2% | 61.0% |
| 3702154 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 54.0 | 5.73e-01 | 81.4% | 80.0% |
| 5071741 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 47.0 | 5.53e-01 | 74.4% | 88.3% |
| 2427475 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 49.0 | 5.50e-01 | 77.9% | 83.6% |
| 3917372 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.77 | 56.0 | 6.02e-01 | 91.9% | 88.0% |
| 3575865 | 4.1.1.169 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4819 | 0.76 | 58.0 | 6.40e-01 | 97.7% | 98.6% |
| 4241924 | 4.1.1.93 ↗ | beta barrels › SH3 › SH3 › SH3 › 40S_S4_C | 0.76 | 51.0 | 5.03e-01 | 73.3% | 65.6% |
| 4505316 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 51.0 | 5.90e-01 | 80.2% | 98.3% |
| 5026824 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 51.0 | 5.61e-01 | 76.7% | 85.7% |
| 3687350 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 46.0 | 5.60e-01 | 80.2% | 96.4% |
| 5036729 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.75 | 69.0 | 6.11e-01 | 100.0% | 81.7% |
| 3183108 | 4.1.1.69 ↗ | beta barrels › SH3 › SH3 › SH3 › Clr2 | 0.75 | 66.0 | 5.06e-01 | 95.3% | 97.8% |
| 3707346 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 59.0 | 6.07e-01 | 83.7% | 95.2% |
| 3964666 | 4.1.1.137 ↗ | beta barrels › SH3 › SH3 › SH3 › PcrA_UvrD_tudor | 0.74 | 46.0 | 5.34e-01 | 83.7% | 90.0% |
| 4120629 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.74 | 54.0 | 5.79e-01 | 87.2% | 88.0% |
| 4170983 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 57.0 | 6.10e-01 | 87.2% | 94.7% |
| 4936914 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.73 | 55.0 | 5.09e-01 | 87.2% | 63.8% |
| 3581817 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.73 | 52.0 | 5.92e-01 | 88.4% | 98.5% |
| 4215369 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.72 | 66.0 | 5.81e-01 | 100.0% | 81.6% |
| 3932484 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 52.0 | 5.93e-01 | 88.4% | 100.0% |
| 3959770 | 4.31.1.0 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 | 0.72 | 53.0 | 5.21e-01 | 84.9% | 73.3% |
| 3616769 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.71 | 51.0 | 4.90e-01 | 87.2% | 66.3% |
| 3185321 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.71 | 56.0 | 6.01e-01 | 88.4% | 96.0% |
| 3942912 | 4.1.1.323 ↗ | beta barrels › SH3 › SH3 › SH3 › WYL | 0.71 | 55.0 | 5.62e-01 | 88.4% | 83.5% |
| 4960540 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 51.0 | 5.84e-01 | 84.9% | 100.0% |
| 3978997 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.71 | 57.0 | 5.48e-01 | 88.4% | 76.8% |
| 3581336 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 53.0 | 4.87e-01 | 87.2% | 61.8% |
| 5053906 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.71 | 46.0 | 5.33e-01 | 81.4% | 95.0% |
| 4000622 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.70 | 50.0 | 4.43e-01 | 86.0% | 53.3% |
| 3843359 | 4.1.1.246 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin | 0.70 | 55.0 | 5.53e-01 | 86.0% | 84.7% |
| 5071546 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.70 | 57.0 | 4.86e-01 | 87.2% | 55.6% |
| 5056826 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.69 | 46.0 | 5.13e-01 | 84.9% | 89.2% |
| 3797642 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 52.0 | 4.02e-01 | 87.2% | 36.8% |
| 3624306 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.69 | 58.0 | 5.10e-01 | 90.7% | 92.8% |
| 4545520 | 4.7.1.7 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL | 0.69 | 53.0 | 5.38e-01 | 86.0% | 82.4% |
| 4528717 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.69 | 47.0 | 5.22e-01 | 82.6% | 88.4% |
| 5050320 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.69 | 50.0 | 5.35e-01 | 87.2% | 88.0% |
| 4195627 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.69 | 45.0 | 5.12e-01 | 77.9% | 89.2% |
| 5015352 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 52.0 | 5.34e-01 | 97.7% | 84.3% |
| 3180573 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 55.0 | 5.35e-01 | 87.2% | 83.2% |
| 3503000 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 54.0 | 5.51e-01 | 86.0% | 98.8% |
| 3519122 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.68 | 56.0 | 5.50e-01 | 88.4% | 87.8% |
| 3953109 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.67 | 53.0 | 5.15e-01 | 88.4% | 75.8% |
| 4224041 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.67 | 50.0 | 5.29e-01 | 89.5% | 89.3% |
| 5043979 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 51.0 | 5.62e-01 | 88.4% | 100.0% |
| 3385654 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 51.0 | 4.51e-01 | 80.2% | 95.0% |
| 3281618 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.67 | 54.0 | 5.15e-01 | 87.2% | 80.0% |
| 3793311 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.66 | 45.0 | 5.25e-01 | 70.9% | 100.0% |
| 4001172 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.66 | 46.0 | 5.11e-01 | 74.4% | 90.0% |
| 4071824 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.65 | 50.0 | 5.26e-01 | 88.4% | 93.3% |
| 3166879 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.63 | 46.0 | 5.14e-01 | 82.6% | 100.0% |
| 3394559 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 50.0 | 4.71e-01 | 86.0% | 85.7% |
| 3737837 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 44.0 | 4.98e-01 | 74.4% | 100.0% |
| 3216019 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 43.0 | 4.83e-01 | 72.1% | 100.0% |
| 3714904 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.61 | 50.0 | 3.18e-01 | 91.9% | 26.1% |
| 4405469 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.61 | 49.0 | 4.78e-01 | 88.4% | 83.2% |
| 3737927 | 220.1.1.294 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26663 | 0.61 | 42.0 | 3.81e-01 | 82.6% | 55.5% |
| 3935507 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 48.0 | 4.63e-01 | 89.5% | 78.0% |
| 3633294 | 219.1.1.93 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 | 0.59 | 42.0 | 3.60e-01 | 75.6% | 94.2% |
| 4537528 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 44.0 | 4.82e-01 | 81.4% | 100.0% |
| 3363751 | 4.1.1.246 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin | 0.58 | 48.0 | 4.58e-01 | 93.0% | 88.6% |
| 3315510 | 4.1.1.246 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin | 0.58 | 49.0 | 4.58e-01 | 95.3% | 86.4% |
| 3936663 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 47.0 | 4.22e-01 | 90.7% | 76.8% |
| 3636503 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.57 | 42.0 | 4.62e-01 | 86.0% | 98.6% |
| 3263467 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.56 | 41.0 | 4.29e-01 | 81.4% | 85.0% |
| 4989873 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.55 | 43.0 | 3.91e-01 | 87.2% | 96.7% |
| 4159881 | 220.1.1.197 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28623 | 0.53 | 45.0 | 4.36e-01 | 95.3% | 97.9% |
| 5039871 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.53 | 44.0 | 3.17e-01 | 93.0% | 72.3% |