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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00284

Bact-Vir

SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00284

Identity

Kingdom:
phage

Quality

85.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-61
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 59.0 5.60e-01 100.0% 72.3%
8b2gA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 61.0 5.96e-01 89.1% 100.0%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 64.0 5.16e-01 100.0% 62.5%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 62.0 6.29e-01 100.0% 98.2%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 63.0 5.86e-01 100.0% 79.4%
1ug1A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 63.0 5.31e-01 100.0% 63.0%
7r3mA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 62.0 5.49e-01 100.0% 69.5%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 62.0 5.10e-01 100.0% 55.1%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 62.0 6.01e-01 100.0% 88.9%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 56.0 5.87e-01 100.0% 98.0%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 62.0 5.85e-01 100.0% 91.0%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 62.0 6.17e-01 100.0% 98.3%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 61.0 5.93e-01 100.0% 90.0%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 59.0 5.86e-01 100.0% 91.5%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 60.0 5.80e-01 100.0% 92.1%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 61.0 5.59e-01 100.0% 79.2%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 61.0 5.79e-01 100.0% 89.1%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 59.0 5.58e-01 100.0% 83.1%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 59.0 5.58e-01 100.0% 86.6%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 5.25e-01 100.0% 71.1%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 54.0 5.28e-01 100.0% 83.9%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 58.0 5.60e-01 100.0% 90.3%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.65 54.0 5.09e-01 100.0% 93.0%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.64 55.0 4.09e-01 100.0% 39.1%
2n88A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 45.0 4.51e-01 76.4% 75.9%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 4.85e-01 100.0% 75.4%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 4.99e-01 100.0% 80.8%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 53.0 5.26e-01 100.0% 94.7%
2rsoA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 45.0 3.80e-01 76.4% 51.1%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.62 57.0 5.15e-01 100.0% 89.2%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 52.0 4.37e-01 90.9% 78.9%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.61 54.0 4.60e-01 100.0% 80.0%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 51.0 4.96e-01 100.0% 88.7%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 51.0 4.03e-01 100.0% 57.0%
4fnfA00 2.40.50.50 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 48.0 3.97e-01 94.5% 92.9%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 46.0 4.37e-01 100.0% 77.1%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 3.59e-01 100.0% 45.5%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 42.0 4.19e-01 100.0% 84.7%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 37.0 2.94e-01 76.4% 34.6%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.53 43.0 4.04e-01 100.0% 84.2%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 43.0 3.57e-01 94.5% 88.7%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 40.0 3.46e-01 87.3% 64.9%
2gqfA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 2.90e-01 98.2% 61.8%
1mo9A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 3.33e-01 98.2% 49.6%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.63e-01 100.0% 75.0%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.52e-01 100.0% 57.8%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 40.0 3.62e-01 90.9% 74.4%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 43.0 4.09e-01 98.2% 89.7%
ECOD (86)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4644007 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.82 67.0 6.60e-01 100.0% 83.1%
5065184 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 55.0 5.96e-01 92.7% 86.7%
4138563 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 66.0 6.27e-01 100.0% 75.4%
4941620 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 66.0 6.47e-01 100.0% 81.7%
4171942 4.1.1.178 beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.80 74.0 5.87e-01 100.0% 64.4%
4354770 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.80 65.0 6.00e-01 100.0% 70.0%
5058103 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 64.0 6.01e-01 100.0% 72.1%
5029655 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 64.0 6.24e-01 100.0% 81.7%
3598499 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 66.0 4.84e-01 100.0% 36.4%
3612090 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 66.0 6.42e-01 100.0% 85.0%
5069062 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.77 62.0 6.13e-01 100.0% 83.1%
3255737 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.76 66.0 5.17e-01 100.0% 66.7%
3594062 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 65.0 4.86e-01 100.0% 74.5%
4621153 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 61.0 5.93e-01 100.0% 81.7%
3610097 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.75 65.0 4.89e-01 100.0% 73.6%
5042614 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 61.0 5.60e-01 100.0% 70.0%
3204891 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 66.0 5.99e-01 100.0% 97.3%
4467360 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 60.0 5.88e-01 100.0% 81.7%
3363136 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.74 64.0 5.00e-01 98.2% 67.5%
4966131 4.1.3.1 beta barrels › SH3 › SH3 › Calcium-binding protein CcbP › Calci_bind_CcbP 0.74 66.0 5.22e-01 100.0% 50.0%
3512902 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.73 59.0 5.99e-01 100.0% 87.3%
3934278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 67.0 5.17e-01 100.0% 49.6%
4091379 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 65.0 6.02e-01 100.0% 78.6%
3251896 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.73 63.0 5.02e-01 100.0% 66.1%
3370389 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 65.0 6.19e-01 100.0% 87.7%
3518287 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.73 67.0 5.14e-01 100.0% 49.6%
3263489 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 64.0 6.07e-01 100.0% 84.6%
3921963 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.71 62.0 4.73e-01 100.0% 64.4%
3589606 4.1.1.109 beta barrels › SH3 › SH3 › SH3 › SH3_13 0.71 62.0 5.78e-01 100.0% 84.3%
4610859 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 62.0 5.89e-01 100.0% 83.1%
3599257 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 62.0 5.94e-01 100.0% 84.6%
3801719 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 62.0 5.77e-01 100.0% 78.6%
3765126 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 63.0 6.36e-01 100.0% 100.0%
3482868 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 62.0 6.26e-01 100.0% 100.0%
3425872 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.70 61.0 5.16e-01 98.2% 80.0%
3793311 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 61.0 6.01e-01 100.0% 96.7%
3742938 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.69 58.0 5.50e-01 100.0% 80.0%
3525376 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 61.0 5.83e-01 100.0% 86.2%
4105348 4.1.1.394 beta barrels › SH3 › SH3 › SH3 › SlpA 0.69 59.0 5.69e-01 98.2% 98.4%
3784770 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 61.0 5.54e-01 100.0% 88.0%
4937158 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 50.0 4.91e-01 100.0% 71.7%
3491785 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.69 60.0 4.78e-01 100.0% 67.0%
3773481 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 60.0 5.34e-01 100.0% 73.8%
3383638 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.68 60.0 4.40e-01 100.0% 75.3%
3788449 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 60.0 5.59e-01 100.0% 78.6%
3928985 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 59.0 5.09e-01 100.0% 65.6%
3170922 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 59.0 5.51e-01 98.2% 79.4%
3517415 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.68 58.0 5.50e-01 100.0% 80.0%
3505589 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.67 58.0 4.45e-01 100.0% 43.3%
3797477 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.60e-01 100.0% 93.8%
4022025 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.66 58.0 4.30e-01 100.0% 42.1%
3739064 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.53e-01 100.0% 84.6%
3218475 4.1.1.390 beta barrels › SH3 › SH3 › SH3 › PF29855 0.66 57.0 4.47e-01 100.0% 48.3%
3609256 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 59.0 5.05e-01 100.0% 68.2%
3810562 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 58.0 5.23e-01 100.0% 77.3%
3932586 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.65 51.0 3.83e-01 94.5% 32.5%
3700860 219.1.1.4 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.64 55.0 3.37e-01 100.0% 32.6%
3842361 1.1.5.76 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.64 54.0 4.64e-01 100.0% 75.8%
3923839 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 49.0 4.66e-01 89.1% 98.6%
3408588 4.1.1.243 beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.64 52.0 4.87e-01 100.0% 71.4%
4116754 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.64 44.0 4.64e-01 100.0% 91.1%
3936608 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 55.0 4.44e-01 100.0% 72.7%
1144777 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.64 46.0 3.76e-01 78.2% 59.6%
3987601 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 50.0 5.22e-01 100.0% 98.0%
3289944 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.63 55.0 4.71e-01 100.0% 63.3%
3787905 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 52.0 4.95e-01 100.0% 82.9%
3618716 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.62 47.0 4.65e-01 85.5% 78.3%
3995092 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.61 49.0 3.53e-01 100.0% 29.0%
3888226 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 49.0 4.61e-01 100.0% 74.7%
1144827 4.1.1.79 beta barrels › SH3 › SH3 › SH3 › DUF3601 0.61 51.0 4.50e-01 100.0% 80.9%
3707345 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 54.0 4.56e-01 100.0% 92.2%
3393809 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.60 47.0 3.31e-01 92.7% 98.0%
5053224 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.90e-01 98.2% 88.3%
3572647 4.1.1.227 beta barrels › SH3 › SH3 › SH3 › PWWP_KDM3B 0.58 47.0 4.14e-01 100.0% 60.0%
4542692 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.19e-01 100.0% 67.1%
4850056 2.2.1.5 beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › LT-IIB 0.57 43.0 4.44e-01 87.3% 86.5%
3595651 4.1.1.309 beta barrels › SH3 › SH3 › SH3 › MRP-S34 0.57 49.0 3.86e-01 100.0% 50.0%
3894035 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.56 46.0 2.75e-01 96.4% 18.3%
4926892 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.56 46.0 3.79e-01 100.0% 58.3%
3598298 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 41.0 4.07e-01 92.7% 78.3%
5067458 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 43.0 4.34e-01 92.7% 92.7%
3958145 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 48.0 4.59e-01 100.0% 90.8%
3204489 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.54 47.0 3.00e-01 100.0% 45.3%
4851967 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.52 44.0 4.26e-01 100.0% 90.3%
3600338 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 40.0 3.67e-01 96.4% 65.0%
3633449 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.51 36.0 2.73e-01 81.8% 57.6%