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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00303
Bact-VirSR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00303
Identity
- Kingdom:
- phage
Quality
68.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-52
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wa0A01 | 1.10.10.1200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif | 0.67 | 53.0 | 4.24e-01 | 88.0% | 50.5% |
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 47.0 | 4.33e-01 | 74.0% | 63.5% |
| 4bndA02 | 3.30.1240.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain | 0.62 | 47.0 | 3.88e-01 | 84.0% | 51.0% |
| 2i2lA01 | 2.10.70.50 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.62 | 42.0 | 4.24e-01 | 74.0% | 78.8% |
| 1dctA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 48.0 | 3.50e-01 | 100.0% | 59.5% |
| 1pg2A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.59 | 43.0 | 2.60e-01 | 78.0% | 56.8% |
| 6gfaA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.59 | 42.0 | 4.16e-01 | 100.0% | 69.6% |
| 3vz9B00 | 3.30.457.50 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 | 0.59 | 42.0 | 3.41e-01 | 78.0% | 41.7% |
| 4g6tA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.59 | 42.0 | 3.29e-01 | 92.0% | 32.0% |
| 6ketA01 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.59 | 40.0 | 2.43e-01 | 72.0% | 33.6% |
| 6juvB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 48.0 | 4.36e-01 | 100.0% | 73.3% |
| 4jz8B00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.58 | 41.0 | 2.58e-01 | 78.0% | 92.9% |
| 7uvpA02 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.58 | 41.0 | 3.84e-01 | 82.0% | 58.0% |
| 3ho6B00 | 3.40.50.11050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain | 0.57 | 45.0 | 2.98e-01 | 92.0% | 34.4% |
| 5yk4A04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.57 | 46.0 | 3.41e-01 | 92.0% | 57.4% |
| 6iy8A01 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.57 | 38.0 | 2.59e-01 | 70.0% | 47.6% |
| 3w1yB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 45.0 | 3.72e-01 | 96.0% | 77.9% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.56 | 43.0 | 3.60e-01 | 92.0% | 65.7% |
| 2af6A01 | 3.30.70.3180 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 40.0 | 3.05e-01 | 80.0% | 35.1% |
| 1oyiA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 40.0 | 3.74e-01 | 84.0% | 62.9% |
| 4jtmA00 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.54 | 40.0 | 3.52e-01 | 84.0% | 67.9% |
| 2xubA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 3.30e-01 | 82.0% | 48.7% |
| 3cuqA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 40.0 | 3.45e-01 | 82.0% | 53.8% |
| 3ffhA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 43.0 | 3.33e-01 | 100.0% | 66.7% |
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.53 | 40.0 | 3.49e-01 | 84.0% | 59.3% |
| 1e6vB02 | 1.20.840.10 | Mainly Alpha › Up-down Bundle › Methyl-coenzyme M Reductase; Chain B, domain 2 › Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal | 0.52 | 41.0 | 2.68e-01 | 98.0% | 34.6% |
| 2zo4A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.78e-01 | 82.0% | 77.6% |
| 6jbvA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 40.0 | 3.03e-01 | 94.0% | 58.5% |
| 3g87A02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.51 | 36.0 | 3.33e-01 | 82.0% | 55.2% |
| 2ganA02 | 6.20.300.10 | Special › Other non-globular › CbiD-like › | 0.51 | 36.0 | 3.90e-01 | 82.0% | 97.4% |
| 4nvsA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 35.0 | 2.55e-01 | 80.0% | 23.9% |
| 3mwmA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 40.0 | 3.55e-01 | 88.0% | 61.3% |
| 1ewqA04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.51 | 39.0 | 3.03e-01 | 92.0% | 44.1% |
| 1vyiA00 | 1.20.120.820 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphoprotein, C-terminal domain | 0.51 | 41.0 | 3.33e-01 | 94.0% | 86.5% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 39.0 | 3.04e-01 | 82.0% | 39.0% |
| 1nubA01 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.50 | 34.0 | 3.02e-01 | 72.0% | 56.1% |
| 2g6gA02 | 2.40.240.50 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases | 0.50 | 33.0 | 2.33e-01 | 70.0% | 99.0% |
| 5dm6S01 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.50 | 35.0 | 3.07e-01 | 78.0% | 90.7% |
| 3sb1A01 | 3.30.1370.140 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › HupH hydrogenase expression protein, C-terminal domain | 0.50 | 40.0 | 3.30e-01 | 94.0% | 100.0% |
| 3uoxB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 37.0 | 2.41e-01 | 88.0% | 80.3% |
| 1d7bA00 | 2.60.40.1210 | Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain | 0.50 | 37.0 | 2.70e-01 | 88.0% | 45.9% |
| 2lsoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 37.0 | 3.21e-01 | 82.0% | 55.4% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3714022 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.70 | 47.0 | 4.45e-01 | 78.0% | 58.3% |
| 5076133 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.62 | 50.0 | 4.38e-01 | 92.0% | 70.0% |
| 3204558 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.62 | 42.0 | 2.90e-01 | 70.0% | 32.4% |
| 3267720 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.62 | 45.0 | 3.74e-01 | 78.0% | 58.9% |
| 4970952 | 3715.1.1.1 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e | 0.62 | 48.0 | 4.15e-01 | 92.0% | 52.9% |
| 3642675 | 70.3.1.11 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET, zf-MYND | 0.61 | 47.0 | 2.93e-01 | 86.0% | 89.7% |
| 3506396 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 47.0 | 4.19e-01 | 86.0% | 58.7% |
| 4969654 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.61 | 43.0 | 2.74e-01 | 78.0% | 64.2% |
| 5031001 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.61 | 43.0 | 3.14e-01 | 78.0% | 65.8% |
| 3838105 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.60 | 44.0 | 4.05e-01 | 86.0% | 58.6% |
| 4600010 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.60 | 48.0 | 2.98e-01 | 90.0% | 25.6% |
| 3668417 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.60 | 41.0 | 3.06e-01 | 72.0% | 49.2% |
| 3187112 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 47.0 | 3.36e-01 | 94.0% | 84.1% |
| 3282124 | 2007.1.3.32 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › NA-iREase3 | 0.59 | 40.0 | 3.17e-01 | 74.0% | 32.5% |
| 3531821 | 140.1.1.14 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e | 0.59 | 46.0 | 3.03e-01 | 92.0% | 22.4% |
| 3933404 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.59 | 39.0 | 2.85e-01 | 70.0% | 80.0% |
| 4062698 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 46.0 | 2.59e-01 | 92.0% | 11.0% |
| 3642252 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.58 | 42.0 | 3.44e-01 | 84.0% | 65.5% |
| 4217211 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.58 | 43.0 | 2.56e-01 | 82.0% | 14.5% |
| 4933273 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.57 | 48.0 | 4.10e-01 | 100.0% | 63.3% |
| 4135238 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.57 | 41.0 | 2.64e-01 | 78.0% | 62.1% |
| 5029234 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.55 | 38.0 | 3.77e-01 | 86.0% | 67.3% |
| 54696 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.55 | 42.0 | 2.75e-01 | 96.0% | 21.2% |
| 4420776 | 3492.1.1.1 ↗ | a+b two layers › Chromosome partition protein mukE N-terminal domain › Chromosome partition protein mukE N-terminal domain › Chromosome partition protein mukE N-terminal domain › MukE | 0.55 | 45.0 | 3.03e-01 | 98.0% | 82.3% |
| 4390593 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 40.0 | 3.47e-01 | 82.0% | 57.6% |
| 3928061 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.54 | 41.0 | 2.62e-01 | 94.0% | 19.4% |
| 3308663 | 601.3.1.11 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › PHD_Oberon | 0.54 | 38.0 | 2.88e-01 | 78.0% | 42.1% |
| 3630462 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.54 | 39.0 | 2.93e-01 | 76.0% | 30.7% |
| 3602205 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 38.0 | 3.46e-01 | 82.0% | 53.3% |
| 3584409 | 223.2.1.34 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 | 0.53 | 39.0 | 2.78e-01 | 82.0% | 27.1% |
| 3487912 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 40.0 | 3.09e-01 | 82.0% | 39.1% |
| 3587282 | 142.1.1.10 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › HTH_16 | 0.52 | 37.0 | 3.31e-01 | 90.0% | 52.9% |
| 4945895 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 35.0 | 2.89e-01 | 70.0% | 61.0% |
| 4982733 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 39.0 | 3.24e-01 | 82.0% | 47.8% |
| 3167163 | 101.1.2.65 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 | 0.51 | 38.0 | 3.24e-01 | 84.0% | 50.5% |
| 4980908 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.51 | 42.0 | 3.08e-01 | 100.0% | 62.6% |
| 4030596 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 38.0 | 3.24e-01 | 82.0% | 50.6% |
| 4247304 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.51 | 38.0 | 3.53e-01 | 82.0% | 61.5% |
| 4944350 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 38.0 | 3.24e-01 | 82.0% | 48.2% |
| 3474795 | 223.2.1.34 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 | 0.50 | 41.0 | 2.83e-01 | 94.0% | 30.0% |