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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00311

Bact-Vir

SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00311

Identity

Kingdom:
phage

Quality

78.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-53
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.87 79.0 6.54e-01 100.0% 69.6%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 72.0 5.32e-01 100.0% 47.1%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 73.0 7.12e-01 100.0% 94.1%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 72.0 6.67e-01 100.0% 93.2%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 71.0 6.68e-01 100.0% 93.0%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 71.0 5.92e-01 100.0% 67.5%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 71.0 6.38e-01 100.0% 87.5%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 70.0 6.19e-01 100.0% 79.4%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 69.0 6.28e-01 100.0% 76.6%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 68.0 6.67e-01 100.0% 90.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 71.0 6.61e-01 100.0% 86.0%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.78 67.0 5.97e-01 100.0% 73.9%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 67.0 6.07e-01 100.0% 96.9%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 68.0 6.08e-01 100.0% 84.8%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 66.0 5.46e-01 100.0% 62.8%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 63.0 5.90e-01 95.7% 98.3%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 67.0 5.74e-01 100.0% 81.1%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 64.0 5.58e-01 100.0% 63.4%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.74 61.0 5.85e-01 100.0% 79.6%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 63.0 6.14e-01 100.0% 88.2%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 62.0 5.63e-01 100.0% 88.2%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 62.0 5.54e-01 100.0% 88.6%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.73 65.0 5.22e-01 100.0% 52.8%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 63.0 6.07e-01 100.0% 98.1%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.72 60.0 6.01e-01 100.0% 91.7%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 59.0 5.69e-01 100.0% 94.7%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 60.0 5.42e-01 100.0% 70.3%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 59.0 5.12e-01 100.0% 61.6%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 59.0 5.58e-01 100.0% 82.1%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.68 58.0 5.71e-01 100.0% 98.0%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.66 56.0 4.52e-01 100.0% 49.0%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.66 54.0 5.08e-01 100.0% 76.3%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.66 56.0 5.37e-01 100.0% 85.2%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.63 52.0 3.64e-01 100.0% 78.9%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 52.0 4.90e-01 100.0% 81.7%
3oyyB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 43.0 4.10e-01 74.5% 96.6%
2aj2A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.62 51.0 4.18e-01 100.0% 55.7%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 50.0 3.80e-01 100.0% 37.6%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.55e-01 100.0% 72.7%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.51e-01 100.0% 74.2%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 48.0 4.57e-01 100.0% 78.3%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.59 46.0 3.26e-01 100.0% 75.0%
4hn7A00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 44.0 3.81e-01 100.0% 82.4%
2hu9A01 2.20.25.270 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 40.0 3.79e-01 87.2% 82.0%
6qwrA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.52 40.0 2.89e-01 100.0% 99.5%
2cjgA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 41.0 2.89e-01 93.6% 66.2%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4367301 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 74.0 7.08e-01 100.0% 87.3%
4602101 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.83 75.0 6.65e-01 100.0% 92.3%
4031578 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 63.0 6.16e-01 100.0% 76.0%
3941133 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 74.0 6.29e-01 100.0% 69.3%
4550532 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.82 73.0 5.87e-01 100.0% 68.9%
4030603 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 73.0 6.44e-01 100.0% 77.9%
3840076 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.82 72.0 6.62e-01 97.9% 100.0%
3998645 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.82 73.0 6.55e-01 100.0% 81.5%
3561462 148.1.3.384 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › SH3_2 0.81 73.0 4.90e-01 100.0% 31.2%
3778124 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.81 73.0 6.53e-01 100.0% 81.5%
4056584 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 73.0 6.06e-01 100.0% 66.3%
3233461 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 73.0 6.68e-01 100.0% 93.3%
3903323 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.81 72.0 6.16e-01 100.0% 70.7%
3523046 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 73.0 5.91e-01 100.0% 62.4%
4491893 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.80 73.0 5.54e-01 100.0% 61.2%
3550579 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 71.0 6.78e-01 100.0% 98.2%
3259044 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.80 71.0 6.73e-01 100.0% 96.4%
3934527 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 69.0 6.53e-01 95.7% 96.4%
3236054 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.80 71.0 6.05e-01 100.0% 72.0%
3713613 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 72.0 6.40e-01 100.0% 87.7%
4196229 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.79 70.0 6.15e-01 100.0% 87.1%
4640515 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.79 62.0 6.13e-01 100.0% 80.0%
3501560 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 70.0 5.66e-01 100.0% 68.9%
3592525 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 68.0 5.20e-01 97.9% 62.7%
3931418 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 70.0 6.48e-01 100.0% 90.0%
3230400 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 70.0 6.30e-01 100.0% 93.8%
3512420 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.79 70.0 5.72e-01 100.0% 62.4%
3703933 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.79 72.0 6.36e-01 100.0% 81.5%
4358722 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.79 70.0 5.37e-01 100.0% 58.1%
3816455 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.79 69.0 5.07e-01 100.0% 57.6%
137947 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.79 69.0 6.14e-01 100.0% 92.5%
3308545 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.77 61.0 4.22e-01 89.4% 30.6%
3721794 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 67.0 6.16e-01 100.0% 76.7%
3924375 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.76 69.0 5.84e-01 100.0% 73.3%
3425872 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.76 64.0 5.23e-01 97.9% 80.0%
3517651 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 65.0 5.65e-01 100.0% 72.0%
3928136 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 67.0 6.20e-01 100.0% 86.7%
5074039 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 67.0 5.72e-01 100.0% 76.0%
3363448 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.75 64.0 5.36e-01 100.0% 70.6%
3854638 4.1.1.131 beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.75 67.0 5.15e-01 100.0% 47.0%
3862537 4.1.1.131 beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.74 65.0 6.44e-01 97.9% 92.0%
3978088 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 65.0 5.87e-01 100.0% 90.8%
4446467 4.1.1.278 beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.74 63.0 5.75e-01 100.0% 87.7%
4319097 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 66.0 6.12e-01 100.0% 79.3%
3240407 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.73 65.0 5.66e-01 100.0% 78.6%
3937299 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 65.0 5.21e-01 100.0% 60.0%
3627859 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.73 65.0 5.51e-01 100.0% 73.3%
4954284 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 59.0 5.47e-01 100.0% 71.7%
5022448 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 63.0 5.41e-01 100.0% 85.3%
4932493 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 63.0 5.71e-01 100.0% 73.8%
3504834 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 63.0 5.93e-01 100.0% 82.8%
3940362 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.72 64.0 4.05e-01 100.0% 23.6%
4987744 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.71 61.0 4.47e-01 100.0% 40.0%
3933539 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.67e-01 100.0% 81.5%
3930366 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.84e-01 100.0% 88.3%
4584943 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 60.0 5.39e-01 100.0% 70.0%
3937333 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.24e-01 100.0% 62.5%
2756510 4.1.1.131 beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.71 62.0 5.01e-01 100.0% 52.8%
3925589 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 63.0 5.48e-01 100.0% 88.6%
3500448 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 61.0 5.52e-01 100.0% 76.9%
3934192 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 62.0 5.75e-01 100.0% 86.7%
3710823 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 57.0 5.61e-01 100.0% 86.0%
3933788 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 61.0 5.65e-01 100.0% 83.3%
4505797 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 58.0 5.35e-01 100.0% 78.5%
3938908 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 61.0 5.40e-01 100.0% 72.9%
3519861 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.59e-01 100.0% 83.3%
3927795 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 62.0 5.70e-01 100.0% 88.3%
4669027 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.69 57.0 3.71e-01 100.0% 24.2%
4943876 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.68 58.0 4.70e-01 100.0% 50.5%
3929784 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.82e-01 100.0% 98.0%
4251101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 56.0 4.78e-01 100.0% 69.4%
2784372 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.68 59.0 5.39e-01 100.0% 76.2%
3935101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 58.0 5.28e-01 100.0% 81.5%
4977702 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.67 57.0 4.76e-01 100.0% 56.5%
3929373 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.67 57.0 5.32e-01 100.0% 88.3%
4947175 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.66 56.0 4.64e-01 100.0% 53.3%
4283343 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 55.0 4.70e-01 100.0% 76.2%
4124780 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 52.0 4.72e-01 100.0% 65.8%
4527355 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 52.0 4.79e-01 100.0% 73.9%
4956196 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.64 52.0 4.77e-01 97.9% 69.2%
4660084 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 54.0 4.85e-01 100.0% 85.5%
4302032 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 50.0 4.66e-01 100.0% 78.5%
4210485 4.1.1.303 beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.62 52.0 4.78e-01 100.0% 75.4%
4940673 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 50.0 4.73e-01 100.0% 83.3%