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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00385

Bact-Vir

SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00385

Identity

Kingdom:
phage

Quality

87.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-71
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.76 55.0 5.96e-01 89.7% 89.7%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.70 58.0 5.75e-01 97.1% 86.1%
2pwwA00 3.30.310.100 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like 0.69 61.0 5.06e-01 97.1% 87.8%
2fkiA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.68 56.0 4.74e-01 94.1% 80.5%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.66 58.0 5.82e-01 100.0% 94.2%
3mmyA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 48.0 3.02e-01 77.9% 23.2%
4j0wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 47.0 3.04e-01 77.9% 27.2%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.64 47.0 3.10e-01 79.4% 43.5%
1s28A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.63 54.0 4.41e-01 97.1% 84.6%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.62 52.0 4.07e-01 92.6% 72.6%
5uc6A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 49.0 3.84e-01 88.2% 92.1%
4izeA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 48.0 3.77e-01 88.2% 96.1%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.61 51.0 4.46e-01 97.1% 88.1%
4wh5A00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.60 48.0 3.56e-01 85.3% 48.1%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.59 50.0 4.47e-01 100.0% 92.4%
4qt4A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.59 50.0 3.75e-01 100.0% 76.7%
2i8dA01 3.90.1150.200 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.59 48.0 4.57e-01 91.2% 77.8%
3v5nB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.58 49.0 3.71e-01 100.0% 81.0%
1xmbA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.58 48.0 3.21e-01 92.6% 81.8%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.57 48.0 3.66e-01 97.1% 77.7%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 45.0 3.59e-01 86.8% 48.2%
3dtyB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 48.0 3.61e-01 100.0% 80.5%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 46.0 4.22e-01 92.6% 77.9%
1kfiA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.57 47.0 3.94e-01 97.1% 76.8%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.56 46.0 4.22e-01 92.6% 84.6%
1j71A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.55 43.0 3.32e-01 86.8% 49.1%
2x3lA01 3.90.1150.150 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.55 48.0 4.16e-01 98.5% 75.2%
4h3vB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 45.0 3.22e-01 100.0% 71.8%
2vseA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 40.0 3.22e-01 82.4% 92.3%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.53 44.0 3.22e-01 100.0% 68.7%
4my5D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 46.0 3.57e-01 98.5% 53.8%
3asaA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 46.0 3.68e-01 98.5% 60.4%
1u08A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 45.0 3.61e-01 98.5% 61.3%
4opmA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 41.0 2.75e-01 89.7% 90.0%
3b46A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 44.0 3.39e-01 98.5% 60.9%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.52 40.0 3.02e-01 89.7% 79.5%
3eleC01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 43.0 3.33e-01 95.6% 46.3%
1svvB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 45.0 4.11e-01 98.5% 83.7%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 38.0 3.61e-01 98.5% 65.9%
2kv1A01 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.51 40.0 3.80e-01 88.2% 80.2%
4lrjA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 40.0 3.98e-01 88.2% 86.3%
2x5dA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 43.0 3.60e-01 98.5% 67.2%
3bgtA01 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.51 41.0 2.91e-01 92.6% 84.4%
6d0aA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 42.0 3.58e-01 94.1% 73.9%
1v2dA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 44.0 3.56e-01 98.5% 59.7%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2539714 5.1.7.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.72 52.0 3.05e-01 76.5% 23.7%
6642 241.11.1.1 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.68 56.0 4.74e-01 94.1% 80.5%
3742497 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.66 60.0 5.02e-01 100.0% 60.9%
3223920 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 46.0 4.48e-01 76.5% 65.3%
3941694 241.11.1.1 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.66 56.0 4.80e-01 95.6% 84.5%
2722572 3894.1.1.3 beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.64 53.0 4.26e-01 92.6% 68.1%
3074009 9.1.1.31 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › VtrC 0.64 51.0 4.07e-01 86.8% 84.2%
5643 809.2.1.1 a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.64 44.0 4.36e-01 72.1% 94.4%
3299630 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.63 55.0 4.80e-01 98.5% 76.2%
6634 241.1.1.3 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT 0.63 54.0 4.41e-01 97.1% 84.6%
3850090 4099.1.1.19 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM8 0.62 53.0 4.31e-01 98.5% 63.8%
3576759 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 52.0 5.25e-01 97.1% 95.7%
3760199 331.2.1.6 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › Med14_RM8 0.62 53.0 4.77e-01 100.0% 87.0%
4209885 77.1.1.1 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.61 52.0 4.08e-01 97.1% 70.7%
3627280 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.60 51.0 4.98e-01 97.1% 89.3%
4952518 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.60 51.0 4.40e-01 95.6% 94.5%
5042295 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.59 51.0 4.64e-01 97.1% 86.7%
3965099 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.59 50.0 4.38e-01 97.1% 87.6%
4525958 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.59 49.0 4.26e-01 94.1% 75.0%
5013988 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 49.0 4.06e-01 95.6% 95.4%
3169840 897.1.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.59 50.0 3.64e-01 97.1% 86.0%
4218376 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.59 48.0 4.31e-01 94.1% 80.0%
44680 77.1.1.1 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.58 46.0 4.24e-01 91.2% 95.8%
4027422 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.58 35.0 3.83e-01 85.3% 74.5%
4018596 4.1.1.320 beta barrels › SH3 › SH3 › SH3 › SH3_CYT4 0.58 43.0 3.79e-01 79.4% 91.0%
3733997 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.58 51.0 4.19e-01 100.0% 76.0%
3464113 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.58 40.0 3.60e-01 73.5% 78.0%
3970136 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.58 49.0 4.36e-01 100.0% 88.6%
3786637 897.1.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.57 49.0 3.53e-01 97.1% 79.4%
4992199 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.57 50.0 4.55e-01 98.5% 78.9%
141372 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.57 46.0 4.27e-01 92.6% 84.6%
4966454 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.56 47.0 4.41e-01 100.0% 75.6%
4515677 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.56 48.0 4.12e-01 98.5% 65.8%
3839042 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 35.0 3.95e-01 92.6% 95.6%
3218646 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 36.0 3.71e-01 80.9% 69.2%
1839913 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.55 48.0 4.35e-01 98.5% 84.2%
3213114 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 37.0 3.46e-01 70.6% 76.7%
5006738 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.55 49.0 3.77e-01 98.5% 56.1%
4937423 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.43e-01 100.0% 81.2%
4441223 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.54 43.0 3.45e-01 91.2% 83.3%
5056802 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 44.0 3.03e-01 100.0% 26.7%
4667986 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 37.0 2.97e-01 73.5% 84.7%
3638174 4.1.1.320 beta barrels › SH3 › SH3 › SH3 › SH3_CYT4 0.54 40.0 3.64e-01 82.4% 95.8%
4282594 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.54 37.0 3.05e-01 73.5% 77.0%
4634428 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.53 39.0 3.06e-01 79.4% 81.9%
3587052 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.52 43.0 3.96e-01 97.1% 72.6%
3831584 3016.1.1.1 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.52 45.0 3.61e-01 98.5% 70.7%
3993968 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.52 40.0 3.23e-01 85.3% 87.6%
3486330 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 33.0 3.69e-01 88.2% 90.0%
5036616 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.51 38.0 3.83e-01 98.5% 81.4%
3300848 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.51 33.0 2.97e-01 88.2% 43.7%
5035934 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.51 38.0 3.90e-01 98.5% 87.7%
4930861 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.50 38.0 3.91e-01 97.1% 89.2%