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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00393
Bact-VirSR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00393
Identity
- Kingdom:
- phage
Quality
68.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-85
D2
high
residues 90-196
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lhnA00 | 2.40.128.640 | Mainly Beta › Beta Barrel › Lipocalin › | 0.69 | 33.0 | 3.37e-01 | 75.7% | 44.9% |
| 2z4hA01 | 2.40.128.300 | Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain | 0.61 | 36.0 | 4.10e-01 | 78.5% | 78.5% |
| 4n4bA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.61 | 42.0 | 3.03e-01 | 71.0% | 98.1% |
| 2mj7A00 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.60 | 52.0 | 4.76e-01 | 96.3% | 81.6% |
| 3c6kA01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.59 | 45.0 | 4.78e-01 | 91.6% | 92.6% |
| 3qszA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 47.0 | 3.99e-01 | 89.7% | 87.6% |
| 1dfvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 50.0 | 4.31e-01 | 100.0% | 86.1% |
| 4oddA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 49.0 | 4.43e-01 | 98.1% | 91.9% |
| 2kt4B01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 47.0 | 4.36e-01 | 95.3% | 96.5% |
| 2af5A01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.55 | 28.0 | 3.69e-01 | 74.8% | 94.4% |
| 3ia8A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 40.0 | 3.48e-01 | 75.7% | 93.8% |
| 4xrtA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 44.0 | 4.02e-01 | 86.9% | 93.7% |
| 4xrtA02 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 44.0 | 3.94e-01 | 89.7% | 91.3% |
| 3ebwA01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 48.0 | 4.36e-01 | 97.2% | 93.0% |
| 2fwvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 39.0 | 3.21e-01 | 74.8% | 77.4% |
| 3ci0I00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.54 | 32.0 | 3.62e-01 | 72.0% | 77.1% |
| 2x0qA01 | 3.30.310.280 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.52 | 41.0 | 3.86e-01 | 86.0% | 82.0% |
| 3otlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 43.0 | 3.86e-01 | 90.7% | 92.2% |
| 3zqsA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.52 | 36.0 | 3.91e-01 | 72.9% | 90.9% |
| 1i72A00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.52 | 45.0 | 3.45e-01 | 97.2% | 83.7% |
| 3mx7A00 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 33.0 | 3.59e-01 | 83.2% | 77.8% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002402 | 3153.1.1.0 ↗ | a+b two layers › PipX › PipX › PipX | 0.64 | 30.0 | 3.53e-01 | 75.7% | 62.7% |
| 4026208 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.61 | 53.0 | 5.22e-01 | 98.1% | 95.7% |
| 3702931 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.60 | 51.0 | 4.52e-01 | 93.5% | 75.6% |
| 3352272 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.60 | 52.0 | 5.13e-01 | 96.3% | 93.9% |
| 3270919 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.60 | 52.0 | 5.12e-01 | 96.3% | 94.8% |
| 3237828 | 331.9.1.9 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 | 0.60 | 51.0 | 5.13e-01 | 98.1% | 91.8% |
| 3624850 | 331.9.1.9 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 | 0.60 | 50.0 | 5.13e-01 | 97.2% | 95.2% |
| 3698492 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.59 | 42.0 | 4.01e-01 | 72.9% | 87.2% |
| 4026594 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.59 | 51.0 | 4.99e-01 | 98.1% | 94.9% |
| 4974435 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.59 | 32.0 | 3.45e-01 | 75.7% | 60.0% |
| 4353273 | 331.9.1.10 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF28631 | 0.59 | 51.0 | 4.63e-01 | 99.1% | 98.0% |
| 3281056 | 4205.1.1.0 ↗ | a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like | 0.58 | 40.0 | 3.36e-01 | 70.1% | 96.7% |
| 5059099 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.58 | 41.0 | 4.50e-01 | 75.7% | 89.8% |
| 3490491 | 331.4.1.1 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 | 0.57 | 46.0 | 4.89e-01 | 87.9% | 100.0% |
| 4611007 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.56 | 45.0 | 4.50e-01 | 87.9% | 100.0% |
| 4671100 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.56 | 50.0 | 4.44e-01 | 100.0% | 91.0% |
| 3673690 | 331.4.1.23 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › Coatomer_b_Cpla | 0.55 | 46.0 | 4.44e-01 | 92.5% | 84.0% |
| 3380259 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.55 | 39.0 | 4.02e-01 | 74.8% | 97.1% |
| 4929824 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.55 | 45.0 | 4.11e-01 | 91.6% | 73.1% |
| None | — | 0.54 | 34.0 | 4.00e-01 | 97.2% | 98.5% | |
| 3517007 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.54 | 42.0 | 3.51e-01 | 86.0% | 75.6% |
| 3743698 | 12.3.1.19 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 | 0.53 | 38.0 | 2.79e-01 | 74.8% | 88.6% |
| 3661138 | 511.1.1.1 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 | 0.51 | 36.0 | 3.28e-01 | 72.0% | 94.3% |
| 3595152 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 37.0 | 3.11e-01 | 75.7% | 77.1% |
| 4643894 | 9.1.1.8 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PA_decarbox | 0.51 | 40.0 | 3.57e-01 | 86.9% | 89.4% |