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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00399
Bact-VirSR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00399
Identity
- Kingdom:
- phage
Quality
64.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 52-100
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 53.0 | 4.65e-01 | 87.8% | 77.6% |
| 5zwzA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 54.0 | 4.90e-01 | 98.0% | 95.7% |
| 3k8uA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.65 | 53.0 | 4.05e-01 | 100.0% | 52.7% |
| 1xezA01 | 3.30.110.130 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hemolytic toxin, N-terminal domain | 0.65 | 45.0 | 3.96e-01 | 77.6% | 76.5% |
| 1qmyA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.64 | 54.0 | 3.89e-01 | 100.0% | 31.4% |
| 5z8lA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.63 | 52.0 | 4.02e-01 | 95.9% | 71.4% |
| 3hk0B02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 48.0 | 3.58e-01 | 87.8% | 74.5% |
| 4bi3A01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.62 | 52.0 | 4.40e-01 | 100.0% | 65.9% |
| 4ckmB00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.61 | 45.0 | 3.30e-01 | 81.6% | 81.9% |
| 6ijfC01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.61 | 50.0 | 4.22e-01 | 100.0% | 64.5% |
| 3ef2A02 | 3.30.460.70 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.60 | 49.0 | 3.72e-01 | 100.0% | 84.8% |
| 2wy3B00 | 2.60.40.1990 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 40.0 | 2.98e-01 | 71.4% | 92.0% |
| 3pvlA04 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 43.0 | 3.60e-01 | 83.7% | 77.8% |
| 3cpxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.59 | 47.0 | 4.51e-01 | 100.0% | 100.0% |
| 2derA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 48.0 | 4.09e-01 | 95.9% | 69.0% |
| 1e1hA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.59 | 46.0 | 3.01e-01 | 89.8% | 53.2% |
| 2zkmX01 | 2.30.29.240 | Mainly Beta › Roll › PH-domain like › | 0.59 | 43.0 | 3.02e-01 | 87.8% | 50.0% |
| 1xtfA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.58 | 45.0 | 2.68e-01 | 89.8% | 29.3% |
| 1l1oF01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 39.0 | 3.09e-01 | 77.6% | 79.4% |
| 2vobB02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.57 | 45.0 | 3.15e-01 | 100.0% | 40.2% |
| 7z6eA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 43.0 | 3.36e-01 | 85.7% | 80.3% |
| 1iyjB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 43.0 | 3.51e-01 | 100.0% | 96.5% |
| 3u50C01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 37.0 | 2.95e-01 | 77.6% | 92.1% |
| 2jovA01 | 3.10.530.10 | Alpha Beta › Roll › CPE0013-like fold › CPE0013-like | 0.54 | 37.0 | 3.34e-01 | 73.5% | 76.1% |
| 1ssfA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 40.0 | 3.94e-01 | 87.8% | 90.9% |
| 4ic5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 41.0 | 3.49e-01 | 100.0% | 66.3% |
| 3i3tA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.52 | 43.0 | 2.72e-01 | 100.0% | 22.8% |
| 1mixA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 39.0 | 3.31e-01 | 85.7% | 78.5% |
| 2hzmA02 | 2.20.140.20 | Mainly Beta › Single Sheet › q64v53_bacfr protein fold › | 0.51 | 37.0 | 3.27e-01 | 83.7% | 96.5% |
| 1wspA00 | 2.40.240.130 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › | 0.50 | 40.0 | 3.56e-01 | 100.0% | 89.2% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3218844 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 61.0 | 5.08e-01 | 100.0% | 61.1% |
| 3936726 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 53.0 | 5.17e-01 | 91.8% | 100.0% |
| 3234107 | 4.1.1.169 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4819 | 0.66 | 54.0 | 4.95e-01 | 100.0% | 91.4% |
| 4565130 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 55.0 | 4.54e-01 | 100.0% | 66.3% |
| 3777215 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 49.0 | 3.97e-01 | 85.7% | 74.0% |
| 3638174 | 4.1.1.320 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_CYT4 | 0.63 | 49.0 | 4.08e-01 | 91.8% | 57.9% |
| 1069946 | 219.1.1.52 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Tae4 | 0.63 | 52.0 | 3.73e-01 | 100.0% | 36.8% |
| 5012995 | 219.1.1.76 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 | 0.62 | 46.0 | 3.10e-01 | 81.6% | 38.0% |
| 3255028 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.62 | 46.0 | 3.28e-01 | 85.7% | 52.9% |
| 4213984 | 219.1.1.76 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 | 0.61 | 46.0 | 3.22e-01 | 83.7% | 36.0% |
| 4487049 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.58 | 45.0 | 3.23e-01 | 91.8% | 29.1% |
| 3903484 | 220.1.1.64 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII | 0.58 | 42.0 | 3.41e-01 | 83.7% | 69.1% |
| 3005973 | 3484.1.1.2 ↗ | a+b two layers › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Glyco_hydro_64 | 0.58 | 45.0 | 3.19e-01 | 93.9% | 48.9% |
| 3736175 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 43.0 | 3.84e-01 | 93.9% | 70.6% |
| 2488620 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 46.0 | 4.43e-01 | 98.0% | 100.0% |
| 3868497 | 220.1.1.64 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII | 0.57 | 41.0 | 3.33e-01 | 83.7% | 65.2% |
| 3920767 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 40.0 | 3.39e-01 | 81.6% | 71.0% |
| 5064007 | 219.1.1.76 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 | 0.56 | 41.0 | 2.96e-01 | 85.7% | 31.7% |
| 4634055 | 219.1.1.76 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 | 0.55 | 47.0 | 3.24e-01 | 100.0% | 86.3% |
| 2773985 | 219.1.1.43 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CoV_peptidase | 0.55 | 43.0 | 2.92e-01 | 100.0% | 21.8% |
| 4460376 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.50 | 38.0 | 3.00e-01 | 87.8% | 80.0% |
D2
medium
residues 1-48_109-124