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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00404
Bact-VirSR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00404
Identity
- Kingdom:
- phage
Quality
54.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 171-224
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ay5A01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.76 | 53.0 | 3.95e-01 | 74.1% | 49.6% |
| 5h41A01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.72 | 61.0 | 3.58e-01 | 94.4% | 21.2% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.72 | 61.0 | 4.90e-01 | 100.0% | 67.5% |
| 2g2dA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.72 | 63.0 | 4.52e-01 | 100.0% | 89.4% |
| 1ia6A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.72 | 63.0 | 3.70e-01 | 100.0% | 21.3% |
| 2fefA01 | 1.20.1440.70 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › PA2201 N-terminal domain-like | 0.71 | 61.0 | 4.73e-01 | 100.0% | 63.2% |
| 4dmvA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 60.0 | 5.21e-01 | 98.1% | 77.6% |
| 2e2eA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.70 | 61.0 | 4.42e-01 | 100.0% | 38.4% |
| 1itxA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.69 | 59.0 | 3.58e-01 | 94.4% | 45.1% |
| 2bvlA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 58.0 | 5.04e-01 | 96.3% | 75.6% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 48.0 | 4.37e-01 | 74.1% | 58.1% |
| 3ccgA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.67 | 52.0 | 3.66e-01 | 88.9% | 41.3% |
| 4dloB02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.67 | 56.0 | 4.36e-01 | 92.6% | 61.5% |
| 3bxwA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.66 | 54.0 | 3.43e-01 | 90.7% | 49.3% |
| 3a8pA02 | 6.10.140.680 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 57.0 | 4.53e-01 | 100.0% | 78.9% |
| 1ctnA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.65 | 55.0 | 3.33e-01 | 92.6% | 34.9% |
| 1v07A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.64 | 54.0 | 4.36e-01 | 96.3% | 91.8% |
| 1ugoA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.64 | 54.0 | 4.51e-01 | 98.1% | 82.8% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.64 | 52.0 | 4.70e-01 | 96.3% | 86.1% |
| 1ug3A02 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.64 | 55.0 | 4.25e-01 | 100.0% | 67.2% |
| 3nowA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.64 | 54.0 | 3.33e-01 | 100.0% | 29.3% |
| 1pixA03 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.63 | 51.0 | 3.21e-01 | 90.7% | 40.1% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.63 | 44.0 | 3.72e-01 | 74.1% | 51.1% |
| 3eabE00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.63 | 48.0 | 4.32e-01 | 90.7% | 87.2% |
| 3vsjA00 | 3.40.830.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like | 0.61 | 53.0 | 3.39e-01 | 98.1% | 56.3% |
| 3looB01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.61 | 52.0 | 3.34e-01 | 100.0% | 61.9% |
| 3p7nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 41.0 | 3.78e-01 | 74.1% | 68.1% |
| 3smvA02 | 1.10.150.750 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.58 | 45.0 | 3.93e-01 | 81.5% | 92.2% |
| 1f20A01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.57 | 46.0 | 3.32e-01 | 90.7% | 47.9% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 43.0 | 3.70e-01 | 83.3% | 55.4% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3734641 | 3924.1.1.0 ↗ | alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 | 0.93 | 67.0 | 3.94e-01 | 74.1% | 11.9% |
| 3587855 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.79 | 55.0 | 5.67e-01 | 74.1% | 80.0% |
| 5065059 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.78 | 55.0 | 5.16e-01 | 74.1% | 72.3% |
| 4079226 | 3939.1.1.2 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › SHE3 | 0.75 | 53.0 | 3.51e-01 | 74.1% | 20.0% |
| 3316145 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.74 | 65.0 | 4.51e-01 | 100.0% | 94.4% |
| 4013084 | 3924.1.1.1 ↗ | alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Fungal_trans_2 | 0.73 | 64.0 | 3.80e-01 | 100.0% | 19.5% |
| 3690182 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.72 | 61.0 | 3.75e-01 | 100.0% | 22.9% |
| 3697208 | 604.7.1.0 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A | 0.71 | 63.0 | 4.82e-01 | 100.0% | 91.2% |
| 3188238 | 109.4.1.18 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA | 0.71 | 61.0 | 3.77e-01 | 100.0% | 24.2% |
| 3266867 | 109.4.1.273 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI4KB-PIK1_PIK | 0.71 | 57.0 | 4.51e-01 | 90.7% | 56.5% |
| 3611452 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 60.0 | 3.86e-01 | 100.0% | 24.8% |
| 4639417 | 2004.1.1.226 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N | 0.70 | 58.0 | 3.22e-01 | 94.4% | 6.8% |
| 3789564 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.69 | 53.0 | 4.20e-01 | 83.3% | 48.2% |
| 3400801 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.69 | 59.0 | 4.48e-01 | 98.1% | 80.0% |
| 4970037 | 633.2.1.0 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein | 0.69 | 58.0 | 5.04e-01 | 96.3% | 71.8% |
| 3254391 | 109.4.1.508 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › KBP_C | 0.68 | 57.0 | 3.80e-01 | 98.1% | 36.6% |
| 3506507 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.68 | 59.0 | 4.44e-01 | 98.1% | 77.8% |
| 4999467 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.67 | 55.0 | 3.38e-01 | 88.9% | 38.7% |
| 3766229 | 558.1.1.31 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › Synaphin | 0.66 | 44.0 | 4.14e-01 | 72.2% | 54.3% |
| 5074758 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.66 | 48.0 | 4.21e-01 | 77.8% | 67.5% |
| 3895294 | 192.5.1.2 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › Tiam_CC_Ex | 0.65 | 56.0 | 4.29e-01 | 100.0% | 75.4% |
| 4960923 | 4156.1.1.6 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc | 0.61 | 49.0 | 3.73e-01 | 96.3% | 98.7% |
| 4399123 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.60 | 50.0 | 3.58e-01 | 96.3% | 61.2% |
| 3564606 | 604.1.1.60 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Stereocilin | 0.58 | 50.0 | 3.61e-01 | 100.0% | 41.8% |
| 4502561 | 283.1.1.3 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase | 0.58 | 49.0 | 4.00e-01 | 94.4% | 90.0% |
| 2075049 | 3787.1.1.0 ↗ | alpha bundles › HAD superfamily helical bundle insertion domain | 0.55 | 42.0 | 3.62e-01 | 81.5% | 54.7% |
| 4027157 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.55 | 47.0 | 2.92e-01 | 94.4% | 38.0% |
D2
medium
residues 89-170