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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00435
Bact-VirSR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00435
Identity
- Kingdom:
- phage
Quality
89.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-69
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nzbX00 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.58 | 43.0 | 3.13e-01 | 79.4% | 66.0% |
| 4y4mC00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 44.0 | 3.06e-01 | 85.3% | 30.6% |
| 4n3pA02 | 3.65.10.10 | Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain | 0.54 | 39.0 | 2.82e-01 | 76.5% | 61.4% |
| 2ri0A00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 39.0 | 2.78e-01 | 77.9% | 83.8% |
| 3gy9A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 41.0 | 3.37e-01 | 88.2% | 68.9% |
| 1ejdA01 | 3.65.10.10 | Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain | 0.53 | 39.0 | 2.85e-01 | 80.9% | 71.0% |
| 1xmxA03 | 1.10.10.680 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) | 0.52 | 40.0 | 3.73e-01 | 100.0% | 66.3% |
| 5fvjA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 39.0 | 3.15e-01 | 89.7% | 60.6% |
| 3c4nA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 41.0 | 2.95e-01 | 94.1% | 39.7% |
| 2iewB00 | 3.30.470.160 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase | 0.51 | 44.0 | 3.02e-01 | 100.0% | 34.4% |
| 4efjA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 43.0 | 3.49e-01 | 100.0% | 47.9% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5032006 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.70 | 50.0 | 4.32e-01 | 100.0% | 48.6% |
| 4979545 | 242.4.1.0 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain | 0.69 | 45.0 | 3.86e-01 | 100.0% | 42.9% |
| 5030462 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.69 | 49.0 | 4.22e-01 | 100.0% | 48.6% |
| 5022334 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.67 | 45.0 | 3.78e-01 | 100.0% | 40.0% |
| 4975970 | 242.4.1.0 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain | 0.66 | 47.0 | 4.12e-01 | 100.0% | 49.5% |
| 4930161 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.62 | 42.0 | 3.62e-01 | 100.0% | 42.7% |
| 4982880 | 242.4.1.0 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain | 0.60 | 40.0 | 3.06e-01 | 100.0% | 27.6% |
| None | — | 0.60 | 45.0 | 3.01e-01 | 82.4% | 26.4% | |
| None | — | 0.60 | 45.0 | 2.99e-01 | 82.4% | 26.3% | |
| 3462512 | 328.7.1.0 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain | 0.60 | 50.0 | 4.54e-01 | 100.0% | 88.0% |
| 3316573 | 328.7.1.0 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain | 0.59 | 50.0 | 3.56e-01 | 100.0% | 38.3% |
| 3381773 | 109.4.1.1305 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long, TPR_24 | 0.59 | 49.0 | 2.90e-01 | 100.0% | 12.5% |
| 3339524 | 328.7.1.0 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain | 0.59 | 49.0 | 4.32e-01 | 97.1% | 90.5% |
| 10268 | 7501.1.1.1 ↗ | a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › DHFR_1 | 0.58 | 42.0 | 3.10e-01 | 79.4% | 66.0% |
| 3809617 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.57 | 48.0 | 3.33e-01 | 100.0% | 36.0% |
| 5035477 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.56 | 44.0 | 4.12e-01 | 100.0% | 68.2% |
| 3816680 | 109.4.1.1260 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long | 0.56 | 46.0 | 3.01e-01 | 100.0% | 24.9% |
| 3916205 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.56 | 42.0 | 2.98e-01 | 85.3% | 31.6% |
| 4974954 | 242.4.1.0 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain | 0.56 | 43.0 | 3.31e-01 | 100.0% | 35.2% |
| 3669263 | 109.4.1.1506 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, Importin_rep_6, TPR_IMB1, TPR_IPO5 | 0.56 | 39.0 | 2.21e-01 | 75.0% | 11.8% |
| 3187913 | 7501.1.1.1 ↗ | a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › DHFR_1 | 0.55 | 44.0 | 3.20e-01 | 91.2% | 97.2% |
| 3056343 | 7501.1.1.1 ↗ | a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › DHFR_1 | 0.54 | 43.0 | 3.06e-01 | 86.8% | 59.4% |
| 4052120 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.53 | 37.0 | 3.19e-01 | 76.5% | 90.0% |
| 3743227 | 109.4.1.3071 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, TOR1L1_N, TPR_IMB1, TPR_IPO5 | 0.52 | 38.0 | 2.16e-01 | 77.9% | 14.6% |
| 4991267 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.52 | 41.0 | 3.63e-01 | 91.2% | 73.4% |
| 3210725 | 109.4.1.2814 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, Importin_rep_5, Importin_rep_6, HEAT_GCN1, TPR_IMB1, TPR_IPO5 | 0.52 | 37.0 | 2.09e-01 | 77.9% | 11.2% |