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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00475

Bact-Vir

SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00475

Identity

Kingdom:
phage

Quality

91.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-76
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 59.0 6.12e-01 100.0% 98.4%
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 56.0 5.66e-01 100.0% 91.4%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 55.0 4.86e-01 100.0% 66.0%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 56.0 4.76e-01 100.0% 60.9%
3c18A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 4.92e-01 82.9% 96.5%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.59 39.0 3.12e-01 71.4% 34.3%
3dlsB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 36.0 2.77e-01 71.4% 74.7%
4hlyA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 3.91e-01 100.0% 96.2%
4qloA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 40.0 2.70e-01 90.0% 65.1%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4659379 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.72 62.0 6.28e-01 100.0% 92.9%
3164764 2008.1.1.168 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30184 0.68 60.0 5.63e-01 100.0% 87.1%
4950811 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.67 56.0 5.11e-01 100.0% 70.0%
3281274 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.67 57.0 5.41e-01 100.0% 80.0%
4957330 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.66 55.0 4.26e-01 100.0% 43.4%
1884678 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.65 56.0 5.38e-01 100.0% 83.3%
4973582 101.1.2.918 ↗ alpha arrays › HTH › HTH › winged helix domain › GMT-wHTH 0.65 60.0 5.85e-01 100.0% 96.0%
4944753 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 54.0 5.04e-01 100.0% 74.1%
4965008 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.64 54.0 4.65e-01 100.0% 60.0%
5062023 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 52.0 4.42e-01 100.0% 54.8%
4139293 101.1.2.546 ↗ alpha arrays › HTH › HTH › winged helix domain › Methyltransf_2 0.63 47.0 2.92e-01 100.0% 14.4%
3286725 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.63 56.0 4.15e-01 100.0% 38.9%
4927944 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 52.0 4.63e-01 100.0% 64.0%
3281879 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.63 56.0 4.14e-01 100.0% 40.0%
4999546 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 55.0 5.00e-01 100.0% 72.6%
4227814 101.1.2.546 ↗ alpha arrays › HTH › HTH › winged helix domain › Methyltransf_2 0.61 48.0 3.01e-01 100.0% 15.4%
3280466 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 54.0 3.96e-01 100.0% 37.9%
4929803 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.60 49.0 3.67e-01 100.0% 35.3%
4927073 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.59 49.0 3.75e-01 100.0% 37.7%
4956874 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.59 53.0 4.78e-01 100.0% 73.7%
5045752 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.59 49.0 3.61e-01 100.0% 33.8%
4931494 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.59 47.0 4.33e-01 100.0% 66.3%
4994455 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 48.0 4.31e-01 100.0% 68.0%
4011658 2003.1.5.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_2 0.51 43.0 3.00e-01 100.0% 85.1%
4451169 2003.1.5.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_2 0.51 43.0 3.01e-01 100.0% 87.2%
2388793 2003.1.5.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_2 0.51 42.0 3.00e-01 100.0% 88.1%
4167550 2003.1.5.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_2 0.51 43.0 3.00e-01 100.0% 88.8%
3953309 213.1.1.25 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.50 33.0 2.52e-01 77.1% 26.9%
5071707 304.19.1.4 ↗ a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › DUF2110_N 0.50 28.0 2.75e-01 92.9% 49.3%