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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00504

Bact-Vir

SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00504

Identity

Kingdom:
phage

Quality

77.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-53
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.89 80.0 6.49e-01 100.0% 55.2%
2gd5A00 6.10.140.1230 Special › Helix non-globular › Helix Hairpins › 0.88 79.0 5.69e-01 100.0% 38.7%
3dwcA00 1.10.1370.30 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.87 79.0 4.47e-01 100.0% 10.8%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.87 79.0 6.39e-01 100.0% 81.2%
2v0xA01 1.10.287.3160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.86 77.0 5.30e-01 100.0% 33.9%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.86 75.0 6.76e-01 100.0% 71.2%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.86 75.0 4.79e-01 100.0% 21.9%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.85 75.0 6.78e-01 100.0% 73.2%
2pmsC00 6.10.140.920 Special › Helix non-globular › Helix Hairpins › 0.85 75.0 5.89e-01 100.0% 61.5%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.84 72.0 6.38e-01 100.0% 65.4%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 75.0 6.21e-01 100.0% 58.7%
1yc9A01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.84 73.0 4.42e-01 98.1% 16.8%
2q1kA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.83 70.0 7.14e-01 98.1% 98.1%
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.83 73.0 4.89e-01 100.0% 26.5%
1b3qA01 1.10.287.560 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain 0.83 75.0 7.13e-01 100.0% 85.5%
2hh7A00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.83 73.0 6.24e-01 100.0% 64.7%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.82 69.0 6.65e-01 100.0% 83.3%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.82 71.0 5.64e-01 100.0% 48.2%
4k7rA01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.82 72.0 4.34e-01 100.0% 48.7%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.82 71.0 6.62e-01 100.0% 83.6%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.82 71.0 4.90e-01 100.0% 91.3%
2az0B00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.81 68.0 6.14e-01 100.0% 69.0%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.81 71.0 6.29e-01 100.0% 68.4%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.81 70.0 4.25e-01 100.0% 15.7%
5azsC01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.81 71.0 4.24e-01 100.0% 48.3%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.80 69.0 5.37e-01 100.0% 45.8%
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.80 70.0 5.70e-01 100.0% 73.0%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.79 69.0 6.71e-01 100.0% 96.6%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.79 69.0 5.43e-01 100.0% 48.2%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.78 67.0 4.45e-01 100.0% 32.9%
2cazC00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.78 66.0 6.26e-01 100.0% 81.2%
1vp7A00 1.10.287.1040 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Exonuclease VII, small subunit 0.77 60.0 5.57e-01 86.8% 67.6%
1ufiC01 1.10.287.1090 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Dimerisation domain of CENP-B 0.77 57.0 6.15e-01 81.1% 100.0%
4akgA11 1.20.920.20 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.77 68.0 4.26e-01 100.0% 19.6%
2kwhA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 64.0 6.31e-01 100.0% 89.3%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 62.0 5.81e-01 100.0% 73.8%
1s5jA04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.76 64.0 6.14e-01 96.2% 85.2%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 65.0 5.89e-01 100.0% 93.3%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.75 59.0 5.45e-01 96.2% 66.2%
4ehsA00 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.74 61.0 4.69e-01 96.2% 40.3%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.73 62.0 5.14e-01 100.0% 81.0%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 58.0 5.49e-01 92.5% 100.0%
2bduA02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.72 58.0 5.26e-01 92.5% 66.2%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.72 60.0 5.49e-01 100.0% 72.0%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 59.0 4.86e-01 100.0% 49.5%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.71 60.0 5.62e-01 100.0% 98.5%
2dw4A03 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.71 59.0 4.98e-01 100.0% 64.4%
1rtwB00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.71 59.0 4.07e-01 100.0% 26.9%
1e7uA05 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.68 55.0 3.78e-01 92.5% 37.2%
1ucuA01 6.10.280.190 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 55.0 5.23e-01 100.0% 82.4%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 57.0 4.17e-01 100.0% 94.4%
2btqB03 1.10.287.600 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 47.0 4.77e-01 94.3% 92.5%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3217798 601.33.1.0 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.93 86.0 5.76e-01 100.0% 30.3%
3233962 622.1.1.0 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.92 84.0 7.25e-01 100.0% 66.3%
3957419 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.91 83.0 7.30e-01 100.0% 70.7%
5041087 5074.1.1.0 extended segments › Bacterial light-harvesting complex subunits › Bacterial light-harvesting complex subunits › Bacterial light-harvesting complex subunits 0.90 81.0 7.80e-01 100.0% 88.3%
4927007 605.1.1.2 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim 0.90 80.0 7.90e-01 96.2% 94.5%
2409294 601.52.1.1 alpha bundles › Four-helical up-and-down bundle › Flagellar hook-associated protein 1 helical domain › Flagellar hook-associated protein 1 helical domain › Flagellin_N 0.88 79.0 5.78e-01 100.0% 39.3%
4946455 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.87 78.0 6.79e-01 100.0% 72.5%
3400786 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.87 80.0 5.68e-01 100.0% 36.6%
1878710 4970.1.1.1 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B 0.87 75.0 7.43e-01 96.2% 91.1%
4146694 192.29.1.277 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Dynamitin 0.86 77.0 7.21e-01 100.0% 81.5%
5054079 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.86 73.0 6.36e-01 100.0% 62.5%
5004498 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.86 72.0 5.79e-01 98.1% 49.0%
3967123 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.86 64.0 5.51e-01 79.2% 100.0%
3988020 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.86 78.0 7.27e-01 100.0% 81.5%
3618523 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.85 75.0 6.28e-01 100.0% 58.9%
4210642 3755.1.1.12 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › CheZ 0.84 74.0 5.57e-01 100.0% 40.8%
3944501 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.84 76.0 6.56e-01 100.0% 72.5%
3968484 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.84 74.0 6.76e-01 100.0% 77.1%
3542203 3755.3.1.44 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › JMY 0.84 74.0 4.94e-01 100.0% 26.5%
4259224 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.83 74.0 5.28e-01 100.0% 61.3%
4670268 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.83 74.0 6.58e-01 100.0% 70.7%
3254975 603.2.1.2 alpha bundles › STAT-like › STAT › STAT › Dict-STAT-coil 0.83 73.0 5.68e-01 100.0% 46.1%
3967403 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.83 73.0 6.85e-01 100.0% 81.5%
3969538 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.83 71.0 7.11e-01 98.1% 94.5%
5070059 3834.1.1.25 alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain › DUF7121 0.83 74.0 4.69e-01 100.0% 69.6%
4311810 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.82 71.0 6.38e-01 100.0% 72.0%
3795 603.2.1.2 alpha bundles › STAT-like › STAT › STAT › Dict-STAT-coil 0.82 71.0 5.52e-01 100.0% 44.9%
3682710 2004.1.1.529 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, DUF6469 0.82 72.0 4.17e-01 100.0% 14.8%
3947741 5086.1.1.84 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND 0.82 72.0 5.51e-01 100.0% 76.7%
3435097 4177.1.1.11 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › DUF632 0.81 71.0 4.49e-01 100.0% 20.4%
3215465 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.81 70.0 5.30e-01 100.0% 40.8%
3394875 109.4.1.102 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › WAPL 0.81 69.0 3.96e-01 100.0% 10.1%
3619575 192.5.1.1 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 0.80 69.0 6.13e-01 100.0% 66.3%
4667859 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.80 69.0 5.44e-01 100.0% 59.1%
4994917 3834.1.1.25 alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain › DUF7121 0.80 71.0 4.53e-01 100.0% 21.6%
3492519 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.79 68.0 5.40e-01 98.1% 66.4%
3322405 3711.1.1.4 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › DOG1 0.79 69.0 4.46e-01 100.0% 69.0%
4013672 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.79 66.0 5.44e-01 96.2% 81.0%
4249161 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.79 68.0 6.44e-01 100.0% 83.1%
3841109 192.29.1.293 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › SHCBP_N 0.79 69.0 5.64e-01 100.0% 53.0%
3622491 3826.1.1.35 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › PF26148 0.78 67.0 5.35e-01 100.0% 52.7%
3971164 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.78 66.0 3.92e-01 100.0% 13.3%
3928077 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.77 67.0 4.93e-01 100.0% 37.2%
3491806 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.77 65.0 4.00e-01 100.0% 15.6%
3609374 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.77 68.0 5.36e-01 100.0% 49.1%
4396464 605.1.1.305 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Exonuc_VII_S 0.76 64.0 6.21e-01 94.3% 85.0%
3973636 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.76 63.0 5.70e-01 94.3% 98.7%
5082381 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.76 67.0 3.93e-01 100.0% 13.2%
4124331 192.15.1.76 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CUPID 0.76 64.0 5.17e-01 100.0% 48.2%
3906467 1008.1.1.106 alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › CSN5_C 0.75 63.0 5.44e-01 100.0% 60.0%
3981585 5086.1.1.84 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND 0.75 63.0 5.65e-01 94.3% 98.7%
3838083 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.75 64.0 5.91e-01 100.0% 82.9%
3231463 632.8.1.2 alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › Alpha-2-MRAP_C 0.75 63.0 5.32e-01 100.0% 56.8%
3194777 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.75 63.0 4.96e-01 100.0% 44.2%
4024166 601.25.1.1 alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical 0.74 64.0 4.55e-01 100.0% 32.4%
3483032 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.74 63.0 4.93e-01 100.0% 45.0%
3417442 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.74 65.0 4.09e-01 100.0% 59.3%
3973695 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.74 64.0 4.41e-01 100.0% 35.8%
3943722 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.74 63.0 3.75e-01 100.0% 19.1%
1647796 5086.1.1.84 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND 0.73 61.0 5.25e-01 100.0% 91.3%
4174593 3922.1.1.248 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PF25876 0.72 60.0 5.41e-01 100.0% 66.7%
4025890 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 60.0 3.60e-01 100.0% 13.4%
3915727 2004.1.1.24 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.72 59.0 3.32e-01 100.0% 7.2%
2831866 192.4.1.1 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.70 56.0 4.43e-01 94.3% 41.3%
3796175 192.15.1.99 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › PF31025 0.64 57.0 5.72e-01 100.0% 100.0%
D2 high residues 66-144
PDB
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gxbA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 48.0 4.45e-01 78.5% 63.5%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 47.0 4.05e-01 78.5% 48.1%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 57.0 5.22e-01 100.0% 83.7%
4gl6A01 3.10.450.570 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Domain of unknown function (DUF5037), N-terminal subdomain 0.61 38.0 3.77e-01 93.7% 59.8%
1ae2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 53.0 5.19e-01 100.0% 98.8%
3c6aA00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.60 42.0 3.17e-01 73.4% 46.5%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 52.0 5.03e-01 100.0% 90.0%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.58 42.0 3.66e-01 77.2% 62.9%
2x8fA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 43.0 2.81e-01 92.4% 19.4%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 38.0 4.21e-01 94.9% 87.3%
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 48.0 4.06e-01 96.2% 75.9%
3pg6B00 3.30.390.130 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.56 48.0 4.06e-01 97.5% 93.3%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 47.0 4.07e-01 100.0% 61.6%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 40.0 2.98e-01 78.5% 84.2%
2gdqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 46.0 4.22e-01 94.9% 84.1%
3ro6C01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 46.0 4.16e-01 93.7% 84.0%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 33.0 3.55e-01 96.2% 73.8%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.38e-01 78.5% 51.2%
3licA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 44.0 3.46e-01 97.5% 41.6%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 39.0 3.33e-01 81.0% 73.6%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.53 42.0 3.38e-01 87.3% 49.1%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 45.0 3.87e-01 96.2% 96.1%
3toyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 44.0 3.86e-01 96.2% 84.3%
2xzmE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 34.0 3.07e-01 96.2% 45.7%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 44.0 3.97e-01 94.9% 87.4%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 42.0 3.66e-01 92.4% 93.0%
2gl5A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 43.0 3.70e-01 94.9% 71.4%
2qw7C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.52 44.0 4.24e-01 100.0% 85.3%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.52 36.0 3.17e-01 72.2% 70.2%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 42.0 3.80e-01 96.2% 94.1%
4g79A00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.51 44.0 3.68e-01 94.9% 72.4%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 41.0 3.60e-01 93.7% 93.8%
4ckmB00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.51 43.0 3.64e-01 100.0% 77.1%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 35.0 3.22e-01 72.2% 68.0%
2qdeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 42.0 3.59e-01 94.9% 66.2%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.50 42.0 3.65e-01 93.7% 90.2%
5uc6A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 42.0 3.44e-01 94.9% 66.2%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5037223 2.1.1.12 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.70 42.0 4.73e-01 84.8% 80.0%
4930846 2.1.1.12 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.69 43.0 4.77e-01 84.8% 81.7%
2756600 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.68 53.0 5.53e-01 100.0% 93.2%
3678038 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.68 56.0 5.70e-01 89.9% 94.7%
4927342 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 60.0 5.82e-01 100.0% 90.0%
3624046 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 47.0 4.12e-01 77.2% 59.2%
3200706 2.1.1.23 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 0.64 57.0 4.56e-01 100.0% 68.1%
3640971 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 58.0 4.62e-01 100.0% 53.5%
3470912 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 46.0 4.05e-01 79.7% 55.8%
3183690 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 45.0 3.69e-01 78.5% 46.0%
3516854 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 48.0 4.26e-01 100.0% 60.0%
3492348 2.1.1.25 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.60 54.0 4.39e-01 100.0% 54.5%
3924939 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.59 41.0 3.67e-01 73.4% 60.0%
396 2.2.1.8 beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › Pertus-S5-tox 0.59 50.0 4.78e-01 100.0% 87.8%
5014255 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.58 42.0 3.56e-01 77.2% 51.9%
3245132 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.58 39.0 3.40e-01 100.0% 43.1%
4938125 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.58 42.0 4.17e-01 78.5% 90.6%
3357183 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 47.0 3.76e-01 89.9% 80.0%
3791220 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.57 41.0 3.57e-01 75.9% 58.1%
3289386 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 47.0 4.56e-01 94.9% 83.0%
4529819 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.56 45.0 3.76e-01 86.1% 84.4%
3285635 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 51.0 4.79e-01 100.0% 87.4%
3206632 896.1.1.2 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.56 40.0 3.97e-01 77.2% 91.8%
4956532 2484.1.1.22 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.56 40.0 3.09e-01 74.7% 83.9%
3662984 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 44.0 4.33e-01 94.9% 80.0%
3961045 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 45.0 4.26e-01 97.5% 74.0%
3955464 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 48.0 4.63e-01 100.0% 86.7%
3961460 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 48.0 3.95e-01 100.0% 66.7%
3759486 330.1.1.2 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.55 37.0 3.73e-01 96.2% 68.8%
3398694 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.54 38.0 3.53e-01 74.7% 62.9%
3342794 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.54 40.0 3.86e-01 97.5% 70.0%
3923143 633.23.1.17 alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA 0.54 39.0 2.83e-01 78.5% 59.2%
5032255 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 37.0 3.93e-01 96.2% 82.9%
4952918 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 37.0 3.65e-01 74.7% 93.3%
3514912 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.53 40.0 4.07e-01 100.0% 85.3%
135442 220.1.1.42 beta barrels › PH domain-like › PH domain-like › PH domain-like › INPP5B_PH 0.53 42.0 3.41e-01 87.3% 50.6%
3217119 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 37.0 2.57e-01 77.2% 56.6%
5053329 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 40.0 3.45e-01 81.0% 85.8%
3739857 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 43.0 3.87e-01 93.7% 95.7%
3328840 284.1.2.0 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.52 39.0 3.85e-01 98.7% 75.3%
4103142 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.52 40.0 4.07e-01 100.0% 83.7%
3658323 284.1.2.1 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C 0.51 39.0 3.55e-01 97.5% 61.0%
3439646 284.1.3.2 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.51 39.0 3.56e-01 97.5% 61.0%
4534466 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.51 39.0 3.71e-01 100.0% 69.5%
3443030 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 40.0 3.98e-01 98.7% 83.7%
3356898 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.51 42.0 3.56e-01 97.5% 94.0%
4505972 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 36.0 2.46e-01 75.9% 41.9%