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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00507
Bact-VirSR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00507
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-120
Domain cluster:
rep: ALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00099__D4-161
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2z84A00 | 3.90.70.130 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.53 | 39.0 | 3.21e-01 | 76.3% | 97.6% |
| 5v6fA00 | 2.100.10.30 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain | 0.50 | 35.0 | 3.36e-01 | 71.2% | 78.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4959592 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.63 | 43.0 | 4.10e-01 | 70.3% | 74.3% |
| 3246591 | 2492.1.1.8 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 | 0.62 | 48.0 | 4.12e-01 | 81.4% | 83.2% |
| 3740761 | 2492.1.1.4 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.61 | 43.0 | 3.47e-01 | 72.0% | 82.7% |
| 3188286 | 2011.1.1.21 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Gaa1 | 0.56 | 40.0 | 2.95e-01 | 74.6% | 42.0% |
| 4023426 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 23.0 | 2.84e-01 | 83.9% | 64.3% |
| 3637915 | 76.1.1.7 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › DUF7600 | 0.51 | 42.0 | 3.84e-01 | 92.4% | 99.4% |
| 4940278 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.50 | 35.0 | 3.12e-01 | 71.2% | 77.6% |
| 3208578 | 76.1.1.7 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › DUF7600 | 0.50 | 39.0 | 3.90e-01 | 83.9% | 98.4% |
| 3268730 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.50 | 36.0 | 3.40e-01 | 77.1% | 84.5% |
D2
high
residues 131-192
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6u26A01 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.70 | 44.0 | 3.95e-01 | 98.4% | 45.5% |
| 2vh2B01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.62 | 38.0 | 3.67e-01 | 100.0% | 52.8% |
| 1knmA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.60 | 44.0 | 3.55e-01 | 80.6% | 92.2% |
| 1itpA00 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.59 | 35.0 | 3.33e-01 | 96.8% | 46.8% |
| 6hrbB01 | 2.70.150.10 | Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A | 0.58 | 40.0 | 3.42e-01 | 75.8% | 83.8% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.57 | 46.0 | 4.25e-01 | 88.7% | 97.5% |
| 1t6sB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 3.58e-01 | 72.6% | 90.9% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3599537 | 102.4.1.0 ↗ | alpha arrays › HhH/H2TH › YozE-like › YozE-like | 0.76 | 56.0 | 4.59e-01 | 77.4% | 52.3% |
| 3940062 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.66 | 37.0 | 2.31e-01 | 75.8% | 10.8% |
| 5078195 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 37.0 | 3.52e-01 | 100.0% | 52.0% |
| 6667 | 4221.1.1.1 ↗ | a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 | 0.58 | 46.0 | 4.27e-01 | 87.1% | 98.7% |
| None | — | 0.53 | 43.0 | 3.13e-01 | 88.7% | 84.6% | |
| 3493298 | 101.1.2.106 ↗ | alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 | 0.52 | 34.0 | 2.56e-01 | 96.8% | 23.5% |
| 4313724 | 140.1.1.14 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e | 0.51 | 45.0 | 3.09e-01 | 100.0% | 60.5% |