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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00511
Bact-VirSR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00511
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-129
Domain cluster:
rep: S27_BME27_1069154_prodigal-single.1__X__X__00601__D22-128
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c6kA01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.78 | 49.0 | 5.71e-01 | 97.7% | 86.2% |
| 1v8cA02 | 3.30.1370.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain | 0.76 | 45.0 | 5.70e-01 | 71.9% | 96.2% |
| 1u8sA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.72 | 39.0 | 4.72e-01 | 73.4% | 79.1% |
| 3trgA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.72 | 40.0 | 4.60e-01 | 76.6% | 73.4% |
| 2f7lA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.72 | 47.0 | 5.67e-01 | 71.1% | 100.0% |
| 7szeB02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.72 | 50.0 | 4.38e-01 | 71.1% | 76.6% |
| 1we8A01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.72 | 40.0 | 4.89e-01 | 72.7% | 84.5% |
| 5lt5A02 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.72 | 46.0 | 5.16e-01 | 100.0% | 82.4% |
| 1khmA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.71 | 43.0 | 5.11e-01 | 78.1% | 87.6% |
| 2ca9A02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.70 | 39.0 | 4.60e-01 | 73.4% | 78.7% |
| 2hzmG01 | 3.30.310.180 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.70 | 47.0 | 4.92e-01 | 99.2% | 75.7% |
| 2zfdB00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.70 | 49.0 | 5.16e-01 | 98.4% | 80.2% |
| 3rt0C00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.70 | 51.0 | 4.57e-01 | 75.0% | 84.3% |
| 2jzxA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.68 | 40.0 | 4.92e-01 | 97.7% | 93.7% |
| 3b77A01 | 2.30.29.50 | Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain | 0.64 | 34.0 | 3.78e-01 | 79.7% | 65.0% |
| 1dpbA00 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.63 | 51.0 | 4.16e-01 | 87.5% | 87.7% |
| 4ewtA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 44.0 | 4.66e-01 | 71.9% | 82.6% |
| 2vneA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.62 | 45.0 | 4.18e-01 | 76.6% | 92.0% |
| 1p1lA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 36.0 | 3.98e-01 | 72.7% | 71.6% |
| 3n79A01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.61 | 31.0 | 3.84e-01 | 73.4% | 79.5% |
| 3i4hX01 | 3.30.70.1890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 43.0 | 4.34e-01 | 73.4% | 82.8% |
| 3ramA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 42.0 | 4.38e-01 | 72.7% | 81.4% |
| 4i0wD02 | 2.60.120.1290 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 41.0 | 4.08e-01 | 71.9% | 82.3% |
| 2v8hA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 40.0 | 4.23e-01 | 71.1% | 80.2% |
| 4fpwB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 52.0 | 4.85e-01 | 100.0% | 78.3% |
| 3io1A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 41.0 | 4.28e-01 | 98.4% | 81.0% |
| 1vmbA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.57 | 37.0 | 4.01e-01 | 74.2% | 78.5% |
| 3klxB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 50.0 | 4.51e-01 | 99.2% | 96.7% |
| 1cqmA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.56 | 36.0 | 4.01e-01 | 72.7% | 83.7% |
| 2fpnA01 | 3.30.2030.10 | Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like | 0.56 | 49.0 | 4.78e-01 | 100.0% | 86.4% |
| 6ofsA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.55 | 41.0 | 3.63e-01 | 100.0% | 53.8% |
| 1dfaA03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.54 | 31.0 | 3.46e-01 | 98.4% | 71.6% |
| 2zylA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.53 | 48.0 | 4.01e-01 | 98.4% | 68.7% |
| 2g5fB00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.52 | 45.0 | 3.13e-01 | 95.3% | 77.9% |
| 2uuvB01 | 3.40.462.40 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidase, cap domain/gating helix | 0.52 | 46.0 | 3.63e-01 | 97.7% | 97.8% |
| 4fprB00 | 3.30.70.2910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 35.0 | 3.55e-01 | 73.4% | 71.9% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5048170 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.78 | 48.0 | 5.86e-01 | 70.3% | 97.5% |
| 5078972 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.75 | 48.0 | 5.75e-01 | 71.9% | 96.5% |
| 3823427 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.74 | 50.0 | 5.13e-01 | 72.7% | 71.2% |
| 3781849 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.73 | 48.0 | 5.69e-01 | 98.4% | 95.6% |
| 5053646 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.73 | 47.0 | 5.63e-01 | 96.9% | 97.6% |
| 3307575 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.72 | 50.0 | 5.61e-01 | 100.0% | 91.0% |
| 3935896 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.72 | 50.0 | 5.01e-01 | 71.1% | 72.3% |
| 3250001 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.71 | 46.0 | 5.40e-01 | 72.7% | 93.3% |
| 4965254 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.71 | 45.0 | 5.27e-01 | 71.1% | 91.0% |
| 3242625 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.71 | 50.0 | 5.37e-01 | 95.3% | 83.6% |
| 3224242 | 331.9.1.3 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_b_Cpla | 0.70 | 56.0 | 5.52e-01 | 84.4% | 83.0% |
| 3784499 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.69 | 49.0 | 4.34e-01 | 73.4% | 89.2% |
| 3619070 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.69 | 50.0 | 4.59e-01 | 75.0% | 85.5% |
| 3679896 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.68 | 39.0 | 4.79e-01 | 72.7% | 86.9% |
| 5053461 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.68 | 50.0 | 4.46e-01 | 75.0% | 78.9% |
| 3653398 | 331.9.1.10 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF28631 | 0.67 | 54.0 | 5.07e-01 | 84.4% | 88.4% |
| 5010189 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.67 | 50.0 | 4.87e-01 | 76.6% | 99.3% |
| 5004871 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.67 | 46.0 | 5.32e-01 | 71.9% | 100.0% |
| 3889564 | 331.18.1.4 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B | 0.67 | 48.0 | 4.41e-01 | 74.2% | 58.7% |
| 3963977 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.66 | 40.0 | 4.84e-01 | 72.7% | 91.8% |
| 3446652 | 331.3.1.40 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF1997 | 0.66 | 48.0 | 4.22e-01 | 75.8% | 91.9% |
| 3998555 | 327.11.2.6 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_10 | 0.65 | 39.0 | 4.96e-01 | 71.9% | 97.5% |
| 3494476 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.65 | 40.0 | 4.84e-01 | 76.6% | 92.9% |
| 2722518 | 331.23.1.1 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.65 | 47.0 | 4.02e-01 | 75.0% | 49.3% |
| 3929632 | 304.126.1.1 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.64 | 45.0 | 4.90e-01 | 96.1% | 87.6% |
| 4250299 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.62 | 41.0 | 4.43e-01 | 96.9% | 80.0% |
| 3896233 | 331.3.1.72 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › FANCAA | 0.62 | 43.0 | 4.65e-01 | 71.1% | 91.8% |
| 4967179 | 304.51.1.13 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6_I-A | 0.62 | 43.0 | 4.54e-01 | 71.1% | 83.5% |
| 3824255 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.62 | 44.0 | 5.00e-01 | 99.2% | 97.9% |
| 3841571 | 331.18.1.0 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc | 0.61 | 51.0 | 4.53e-01 | 89.1% | 63.3% |
| 1548151 | 331.1.1.9 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › RepD-like_N | 0.60 | 41.0 | 4.63e-01 | 100.0% | 93.7% |
| 5038572 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.60 | 41.0 | 3.92e-01 | 70.3% | 90.7% |
| 3257317 | 331.3.1.31 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF1990 | 0.60 | 53.0 | 4.50e-01 | 96.1% | 85.9% |
| 4028122 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.59 | 48.0 | 4.35e-01 | 89.8% | 64.7% |
| 3829548 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.58 | 51.0 | 5.14e-01 | 93.8% | 96.2% |
| 3565109 | 331.18.1.4 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B | 0.56 | 46.0 | 4.08e-01 | 89.8% | 61.1% |
| 3225950 | 304.126.1.1 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.56 | 45.0 | 4.71e-01 | 95.3% | 92.5% |
| 5009503 | 331.3.1.7 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG | 0.54 | 49.0 | 4.82e-01 | 98.4% | 98.6% |
| 4002973 | 872.1.1.9 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › PF29479 | 0.54 | 38.0 | 4.32e-01 | 74.2% | 97.9% |
| 4078947 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.54 | 41.0 | 3.42e-01 | 81.2% | 99.6% |
| 3735466 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.53 | 49.0 | 4.45e-01 | 99.2% | 84.1% |
| 3744472 | 304.107.1.0 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain | 0.53 | 39.0 | 2.85e-01 | 98.4% | 26.9% |
| 3594386 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.53 | 37.0 | 4.13e-01 | 98.4% | 95.8% |
| 4992590 | 881.2.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like | 0.52 | 41.0 | 3.68e-01 | 89.8% | 60.6% |
| 5005014 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.52 | 46.0 | 3.77e-01 | 96.9% | 98.3% |
| 4927440 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.52 | 36.0 | 4.02e-01 | 73.4% | 97.0% |
| 4929253 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.51 | 43.0 | 3.52e-01 | 100.0% | 50.2% |
| 3208869 | 868.1.1.3 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 | 0.51 | 46.0 | 3.80e-01 | 97.7% | 80.9% |
| 3508633 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.51 | 36.0 | 4.10e-01 | 76.6% | 100.0% |
D2
high
residues 138-305
Domain cluster:
rep: LD_Run2_08_scaffold_35_prodigal-single.1__X__X__00177__D121-323
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00004.36 best | AAA | 33.3 | 8.80e-08 | 69.6% | 93.1% |