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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00535
Bact-VirSR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00535
Identity
- Kingdom:
- phage
Quality
85.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-58
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mgpA02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.79 | 67.0 | 4.96e-01 | 97.8% | 46.3% |
| 2dt8A02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.76 | 65.0 | 4.76e-01 | 100.0% | 50.8% |
| 2jx8A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.73 | 48.0 | 4.83e-01 | 100.0% | 68.1% |
| 7dvrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 47.0 | 3.24e-01 | 89.1% | 22.0% |
| 2bn8A00 | 3.30.730.20 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › Cell division activator CedA | 0.69 | 59.0 | 5.25e-01 | 97.8% | 68.7% |
| 2l2mA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.69 | 61.0 | 5.33e-01 | 100.0% | 72.9% |
| 5vmzA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.68 | 50.0 | 5.31e-01 | 89.1% | 97.4% |
| 6fndA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.63 | 44.0 | 2.90e-01 | 73.9% | 21.5% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 54.0 | 4.06e-01 | 100.0% | 38.8% |
| 1yw5A01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.63 | 41.0 | 3.71e-01 | 84.8% | 49.2% |
| 5xpyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 52.0 | 3.92e-01 | 100.0% | 39.8% |
| 2dlxA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 48.0 | 3.82e-01 | 95.7% | 85.0% |
| 4bqqB02 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.61 | 49.0 | 3.27e-01 | 89.1% | 65.3% |
| 2lstA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 50.0 | 3.68e-01 | 100.0% | 77.7% |
| 4hdoA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 47.0 | 3.81e-01 | 100.0% | 45.7% |
| 2yx6D01 | 3.30.420.130 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain | 0.58 | 40.0 | 3.35e-01 | 80.4% | 58.8% |
| 4tvcA01 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.58 | 44.0 | 3.08e-01 | 93.5% | 51.1% |
| 1zvfB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 44.0 | 3.21e-01 | 95.7% | 68.3% |
| 4hkqA04 | 3.10.20.370 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 49.0 | 4.25e-01 | 100.0% | 73.7% |
| 4hslA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 43.0 | 3.13e-01 | 95.7% | 66.3% |
| 1luiA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 45.0 | 3.52e-01 | 93.5% | 50.9% |
| 3lmmA03 | 3.30.565.60 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › | 0.56 | 46.0 | 3.14e-01 | 93.5% | 25.1% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.55 | 41.0 | 3.33e-01 | 82.6% | 44.9% |
| 1zxuA00 | 2.40.160.200 | Mainly Beta › Beta Barrel › Porin › LURP1-related | 0.55 | 44.0 | 3.06e-01 | 89.1% | 92.0% |
| 1c8zA00 | 3.20.90.10 | Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A | 0.55 | 44.0 | 2.74e-01 | 89.1% | 91.3% |
| 3v4rA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 42.0 | 2.76e-01 | 91.3% | 53.7% |
| 2a3vA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.53 | 47.0 | 3.03e-01 | 100.0% | 22.7% |
| 1e6vC00 | 3.90.320.20 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › Methyl-coenzyme M reductase, gamma subunit | 0.53 | 44.0 | 2.84e-01 | 100.0% | 70.6% |
| 2felA00 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.52 | 45.0 | 2.70e-01 | 100.0% | 26.4% |
| 3e99A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 44.0 | 3.10e-01 | 100.0% | 31.8% |
| 2c47A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 35.0 | 3.12e-01 | 76.1% | 95.9% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4945596 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.80 | 64.0 | 6.54e-01 | 89.1% | 91.1% |
| 3334492 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.76 | 67.0 | 5.56e-01 | 100.0% | 78.8% |
| 4029439 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.74 | 63.0 | 5.51e-01 | 95.7% | 76.8% |
| 3290983 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.74 | 42.0 | 2.54e-01 | 82.6% | 9.6% |
| 4028791 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.72 | 60.0 | 5.73e-01 | 95.7% | 94.5% |
| 3208203 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.71 | 47.0 | 4.45e-01 | 73.9% | 56.4% |
| 4257463 | 4292.1.1.1 ↗ | a+b two layers › FlaG-like › FlaG-related › FlaG-related › FlaG | 0.71 | 49.0 | 4.22e-01 | 73.9% | 50.7% |
| 4995200 | 3407.1.1.2 ↗ | mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc | 0.70 | 55.0 | 4.11e-01 | 87.0% | 51.3% |
| 3947081 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.70 | 62.0 | 5.57e-01 | 100.0% | 71.9% |
| 193881 | 252.2.1.4 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › CedA | 0.69 | 59.0 | 5.25e-01 | 97.8% | 68.7% |
| 3189994 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.69 | 45.0 | 3.67e-01 | 73.9% | 34.4% |
| 4119222 | 375.1.1.135 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Lar_restr_allev | 0.67 | 48.0 | 4.70e-01 | 78.3% | 84.0% |
| 3620992 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.67 | 53.0 | 5.20e-01 | 97.8% | 84.0% |
| 134360 | 252.2.1.3 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 | 0.66 | 54.0 | 4.98e-01 | 97.8% | 70.3% |
| 4024311 | 2485.1.1.44 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_7 | 0.66 | 55.0 | 3.98e-01 | 100.0% | 71.0% |
| 3404585 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.66 | 53.0 | 5.16e-01 | 93.5% | 82.0% |
| 3518950 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.65 | 50.0 | 4.07e-01 | 93.5% | 43.2% |
| 3251163 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.65 | 45.0 | 3.62e-01 | 73.9% | 44.4% |
| 3509350 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.64 | 49.0 | 3.59e-01 | 87.0% | 30.6% |
| 3781230 | 1013.1.1.1 ↗ | beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › DUF3337 | 0.63 | 53.0 | 3.50e-01 | 100.0% | 22.4% |
| 4958290 | 2003.1.1.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA | 0.63 | 50.0 | 3.07e-01 | 89.1% | 75.6% |
| 3497020 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.63 | 38.0 | 3.95e-01 | 84.8% | 62.8% |
| 3477576 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.61 | 40.0 | 4.12e-01 | 89.1% | 68.9% |
| 4028456 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 37.0 | 3.80e-01 | 76.1% | 57.8% |
| 4933213 | 375.1.1.31 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 | 0.60 | 47.0 | 4.17e-01 | 89.1% | 64.3% |
| 3486749 | 2485.1.1.44 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_7 | 0.60 | 50.0 | 3.69e-01 | 95.7% | 76.2% |
| 3416458 | 386.1.1.259 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29169 | 0.60 | 47.0 | 4.81e-01 | 95.7% | 93.3% |
| 3702172 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.60 | 43.0 | 3.91e-01 | 78.3% | 80.0% |
| 3811472 | 2003.1.2.103 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Prenylcys_lyase, NAD_binding_8 | 0.59 | 50.0 | 2.92e-01 | 93.5% | 12.9% |
| 3775836 | 220.1.1.56 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH | 0.59 | 51.0 | 3.88e-01 | 100.0% | 40.9% |
| 5036626 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.59 | 48.0 | 2.82e-01 | 93.5% | 14.1% |
| 5047317 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 46.0 | 3.92e-01 | 95.7% | 68.2% |
| 3743639 | 2002.1.1.56 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dus | 0.58 | 51.0 | 3.02e-01 | 100.0% | 22.4% |
| 3790199 | 64.5.1.0 ↗ | beta meanders › WW domain-like › Connector region of RNA helicase HrpB › Connector region of RNA helicase HrpB | 0.57 | 39.0 | 3.61e-01 | 71.7% | 85.0% |
| 4989457 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 45.0 | 4.43e-01 | 91.3% | 96.0% |
| 3968759 | 2003.1.2.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 | 0.57 | 49.0 | 3.02e-01 | 100.0% | 88.5% |
| 3592215 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.57 | 38.0 | 3.67e-01 | 91.3% | 60.4% |
| 4956654 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.56 | 45.0 | 3.00e-01 | 91.3% | 98.5% |
| 3970048 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.55 | 47.0 | 3.98e-01 | 97.8% | 84.6% |
| 3612883 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.54 | 36.0 | 3.62e-01 | 89.1% | 68.9% |
| 3629138 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 38.0 | 3.53e-01 | 78.3% | 96.7% |
| 3192301 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.52 | 46.0 | 2.80e-01 | 100.0% | 70.5% |
| 3241191 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 39.0 | 3.21e-01 | 100.0% | 40.0% |
| 3926962 | 3964.1.1.1 ↗ | beta meanders › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE | 0.51 | 39.0 | 3.29e-01 | 87.0% | 48.8% |
| 3696699 | 376.1.1.125 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2, zf-RING_UBOX | 0.50 | 44.0 | 2.97e-01 | 100.0% | 38.2% |
| 3937384 | 3964.1.1.1 ↗ | beta meanders › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE | 0.50 | 38.0 | 3.31e-01 | 91.3% | 52.0% |