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SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00539
Bact-VirSR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00539
Identity
- Kingdom:
- phage
Quality
85.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-96
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8cukB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.67 | 53.0 | 3.64e-01 | 85.4% | 38.9% |
| 5ic7A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.64 | 51.0 | 3.53e-01 | 87.5% | 36.2% |
| 2bklA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.64 | 51.0 | 3.54e-01 | 87.5% | 41.4% |
| 4nkbA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.63 | 47.0 | 4.41e-01 | 89.6% | 64.9% |
| 1jmoA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.63 | 43.0 | 3.70e-01 | 70.8% | 100.0% |
| 2xe4A02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.62 | 50.0 | 3.45e-01 | 88.5% | 36.9% |
| 2vt8A00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.62 | 53.0 | 4.69e-01 | 95.8% | 81.8% |
| 2oayA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.61 | 42.0 | 3.41e-01 | 70.8% | 95.0% |
| 3ty1A00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.61 | 46.0 | 3.05e-01 | 79.2% | 75.8% |
| 8ainB01 | 3.10.450.250 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor | 0.61 | 50.0 | 4.85e-01 | 88.5% | 91.4% |
| 4hbrA00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 49.0 | 4.36e-01 | 88.5% | 76.4% |
| 8axiA01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.60 | 53.0 | 3.63e-01 | 100.0% | 96.4% |
| 2r9yA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.60 | 42.0 | 3.66e-01 | 72.9% | 95.2% |
| 3zxjA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.58 | 52.0 | 3.62e-01 | 97.9% | 85.9% |
| 2z3zA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.58 | 51.0 | 3.40e-01 | 97.9% | 41.4% |
| 4n4bA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.58 | 51.0 | 3.57e-01 | 97.9% | 65.2% |
| 1imvA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.58 | 44.0 | 3.65e-01 | 80.2% | 91.7% |
| 1h6lA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.58 | 50.0 | 3.46e-01 | 97.9% | 86.7% |
| 8t5tA01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.58 | 43.0 | 3.53e-01 | 80.2% | 85.9% |
| 4q1vA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.58 | 51.0 | 3.33e-01 | 100.0% | 37.5% |
| 1oh1A00 | 2.40.310.10 | Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors | 0.57 | 43.0 | 4.13e-01 | 79.2% | 75.2% |
| 1gpqB00 | 3.40.1420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme | 0.57 | 42.0 | 3.86e-01 | 78.1% | 83.6% |
| 3u1wA01 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 50.0 | 4.03e-01 | 97.9% | 76.5% |
| 3wmyA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.56 | 45.0 | 3.23e-01 | 88.5% | 73.5% |
| 1qmnA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.56 | 42.0 | 3.67e-01 | 78.1% | 97.9% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.56 | 47.0 | 3.84e-01 | 99.0% | 50.3% |
| 4fr9A00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 46.0 | 4.08e-01 | 91.7% | 73.0% |
| 2ffsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 44.0 | 3.88e-01 | 100.0% | 57.9% |
| 3pcrA01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.55 | 42.0 | 4.26e-01 | 82.3% | 87.2% |
| 1iwmA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.54 | 42.0 | 3.47e-01 | 88.5% | 45.2% |
| 1jrrA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.54 | 38.0 | 3.55e-01 | 72.9% | 81.1% |
| 1jyaB00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.53 | 46.0 | 4.33e-01 | 100.0% | 91.7% |
| 4dsdA00 | 3.40.1420.30 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › | 0.53 | 42.0 | 3.83e-01 | 85.4% | 84.1% |
| 3buuB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.53 | 44.0 | 3.52e-01 | 97.9% | 85.5% |
| 4ccdA03 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.52 | 44.0 | 3.56e-01 | 95.8% | 81.5% |
| 7wa9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 44.0 | 3.96e-01 | 96.9% | 75.9% |
| 2awnC03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 30.0 | 3.74e-01 | 75.0% | 96.6% |
| 7qrlA01 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.51 | 44.0 | 3.93e-01 | 94.8% | 65.9% |
| 5e1qB01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 46.0 | 3.33e-01 | 100.0% | 98.9% |
| 2zylA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.50 | 43.0 | 3.40e-01 | 97.9% | 55.8% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3770717 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.65 | 52.0 | 3.55e-01 | 86.5% | 57.4% |
| 3949933 | 5.1.4.14 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N | 0.64 | 51.0 | 3.46e-01 | 86.5% | 35.6% |
| 3939966 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.63 | 48.0 | 4.56e-01 | 89.6% | 70.0% |
| 3273818 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.62 | 50.0 | 3.13e-01 | 86.5% | 36.4% |
| 3309307 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.62 | 49.0 | 2.93e-01 | 84.4% | 20.3% |
| 5046652 | 3784.1.1.0 ↗ | a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related | 0.61 | 46.0 | 3.71e-01 | 79.2% | 89.2% |
| 3282412 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.61 | 45.0 | 4.15e-01 | 77.1% | 68.3% |
| 3202006 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.61 | 52.0 | 3.42e-01 | 92.7% | 94.2% |
| 3899510 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.61 | 46.0 | 3.06e-01 | 80.2% | 55.3% |
| 3706423 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 49.0 | 3.27e-01 | 88.5% | 60.3% |
| 3789628 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.60 | 48.0 | 3.27e-01 | 85.4% | 33.5% |
| 166524 | 4059.1.1.0 ↗ | a+b complex topology › Serpins › Serpins › Serpins | 0.60 | 44.0 | 2.96e-01 | 77.1% | 52.6% |
| 3851509 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.60 | 47.0 | 3.02e-01 | 86.5% | 38.2% |
| 4385734 | 5.1.4.567 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Helveticin_J | 0.60 | 52.0 | 3.66e-01 | 100.0% | 72.7% |
| 3884771 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.59 | 45.0 | 2.99e-01 | 80.2% | 55.3% |
| 3538579 | 5.1.5.135 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Sema | 0.59 | 51.0 | 3.24e-01 | 95.8% | 87.9% |
| 3393242 | 5.1.4.39 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 | 0.59 | 52.0 | 3.48e-01 | 100.0% | 42.3% |
| 3908594 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.59 | 51.0 | 3.49e-01 | 95.8% | 97.6% |
| 3865089 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.58 | 44.0 | 2.99e-01 | 80.2% | 52.5% |
| 3267108 | 5.1.4.224 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 | 0.57 | 50.0 | 3.44e-01 | 96.9% | 78.5% |
| 3853086 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 47.0 | 3.27e-01 | 91.7% | 94.3% |
| 3410461 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.57 | 51.0 | 3.46e-01 | 99.0% | 82.3% |
| 3431417 | 9.2.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF2921_N | 0.57 | 46.0 | 4.01e-01 | 85.4% | 66.4% |
| 1813127 | 5.1.4.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 | 0.56 | 46.0 | 2.88e-01 | 88.5% | 58.0% |
| 4191828 | 5.1.4.100 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N | 0.56 | 49.0 | 3.06e-01 | 97.9% | 31.7% |
| 3940470 | 5.1.4.320 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 | 0.56 | 49.0 | 3.28e-01 | 97.9% | 76.7% |
| 3468705 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 45.0 | 3.06e-01 | 89.6% | 56.7% |
| 1146605 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.56 | 41.0 | 3.37e-01 | 88.5% | 41.6% |
| 3230195 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 47.0 | 3.25e-01 | 93.8% | 94.5% |
| 2773872 | 5.1.5.79 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, WDR90_beta-prop_4th | 0.55 | 49.0 | 3.32e-01 | 96.9% | 58.7% |
| 1171960 | 809.2.1.0 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like | 0.55 | 42.0 | 4.54e-01 | 82.3% | 100.0% |
| 3700623 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.55 | 49.0 | 4.00e-01 | 100.0% | 91.4% |
| 3226595 | 2484.1.1.162 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › F-box | 0.55 | 44.0 | 3.82e-01 | 85.4% | 60.7% |
| 4638995 | 71.1.1.15 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › UCP033729 | 0.54 | 40.0 | 3.31e-01 | 80.2% | 82.0% |
| 3931300 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.54 | 41.0 | 4.23e-01 | 80.2% | 97.8% |
| 3238631 | 2484.1.1.190 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 | 0.54 | 39.0 | 2.91e-01 | 83.3% | 28.1% |
| 3257321 | 241.4.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom | 0.54 | 43.0 | 4.19e-01 | 94.8% | 78.2% |
| 5043479 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 46.0 | 3.35e-01 | 97.9% | 99.6% |
| 3690349 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.52 | 44.0 | 2.82e-01 | 95.8% | 36.2% |
| 3350809 | 77.1.1.5 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN | 0.51 | 35.0 | 3.53e-01 | 85.4% | 70.5% |
| 5010771 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.51 | 44.0 | 3.38e-01 | 99.0% | 77.1% |
| 3927440 | 5.1.4.262 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_CAF1B_HIR1 | 0.51 | 44.0 | 2.98e-01 | 100.0% | 42.8% |
| 3972685 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.50 | 41.0 | 3.61e-01 | 90.6% | 70.7% |
| 3632963 | 844.1.1.3 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF6593 | 0.50 | 43.0 | 3.62e-01 | 94.8% | 67.9% |