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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00010
Bact-VirSR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00010
Identity
- Kingdom:
- phage
Quality
85.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 47-81
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zbdB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.67 | 56.0 | 3.76e-01 | 100.0% | 26.8% |
| 2cjsC01 | 3.30.60.120 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.62 | 50.0 | 4.91e-01 | 100.0% | 86.8% |
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.60 | 52.0 | 3.95e-01 | 100.0% | 50.6% |
| 5y20A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 49.0 | 4.34e-01 | 100.0% | 65.4% |
| 6ui4A01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.54 | 38.0 | 3.13e-01 | 91.4% | 62.5% |
| 1grlB01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.53 | 36.0 | 2.23e-01 | 77.1% | 10.2% |
| 3i35A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 34.0 | 3.02e-01 | 82.9% | 36.8% |
| 3vk8A02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.51 | 35.0 | 2.60e-01 | 97.1% | 74.3% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4015300 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.75 | 68.0 | 4.98e-01 | 100.0% | 41.2% |
| 3710673 | 2005.1.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 | 0.73 | 53.0 | 3.22e-01 | 100.0% | 12.0% |
| 3498119 | 376.1.3.35 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › LIM | 0.71 | 50.0 | 4.12e-01 | 97.1% | 41.5% |
| 5053880 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.64 | 56.0 | 5.17e-01 | 100.0% | 80.0% |
| 3566304 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.60 | 47.0 | 4.59e-01 | 100.0% | 80.0% |
| 3567692 | 376.1.3.85 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Znf_SCAND3 | 0.59 | 49.0 | 4.47e-01 | 100.0% | 70.0% |
| 3229548 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 42.0 | 4.11e-01 | 100.0% | 73.3% |
| 3732738 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.58 | 43.0 | 3.88e-01 | 100.0% | 55.0% |
| 3532171 | 377.1.1.16 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS | 0.57 | 47.0 | 4.39e-01 | 100.0% | 75.6% |
| 3907975 | 377.1.1.50 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ZMYM4 | 0.54 | 43.0 | 4.08e-01 | 100.0% | 75.6% |
| 5010149 | 377.1.1.131 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TRASH_HVO_1752_C | 0.51 | 38.0 | 3.73e-01 | 97.1% | 80.0% |
D2
medium
residues 88-160
Domain cluster:
rep: rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00175__D96-187
D3
medium
residues 164-197
Domain cluster:
representative