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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00082

Bact-Vir

SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00082

Identity

Kingdom:
phage

Quality

52.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 74-131
PDB
Domain cluster: rep: SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00056__D37-91
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1elkA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 53.0 3.93e-01 98.3% 49.0%
2if4A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 45.0 3.63e-01 100.0% 54.1%
4ipeB02 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.55 45.0 3.29e-01 94.8% 62.4%
2hjmA01 1.20.120.460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like 0.54 38.0 3.42e-01 75.9% 81.4%
5z62E00 1.25.40.40 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI 0.53 44.0 3.68e-01 100.0% 51.4%
2xgcA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 40.0 3.20e-01 84.5% 65.6%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.52 41.0 3.00e-01 98.3% 51.7%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 40.0 2.97e-01 86.2% 70.0%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3427479 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.65 54.0 5.51e-01 100.0% 100.0%
3470594 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.63 44.0 4.54e-01 75.9% 83.6%
3380603 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.61 42.0 4.62e-01 75.9% 95.6%
3341479 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.60 42.0 3.99e-01 72.4% 62.9%
2860146 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.60 46.0 4.80e-01 89.7% 96.2%
3382752 109.4.1.1275 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long, TPR_24 0.55 44.0 2.55e-01 93.1% 19.1%
3802516 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.55 46.0 2.85e-01 100.0% 14.9%
3427473 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.55 44.0 4.54e-01 94.8% 100.0%
3764171 574.1.1.2 ↗ alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp,PRP21_like_P 0.54 38.0 3.02e-01 77.6% 35.8%
3628088 574.1.1.2 ↗ alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp,PRP21_like_P 0.54 37.0 2.85e-01 74.1% 33.1%
4850611 109.4.1.259 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tra1_ring 0.53 44.0 2.75e-01 96.6% 37.1%
3258405 574.1.1.2 ↗ alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp,PRP21_like_P 0.53 38.0 2.78e-01 77.6% 27.3%
3853421 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 42.0 3.10e-01 94.8% 56.2%