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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00152

Bact-Vir

SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00152

Identity

Kingdom:
phage

Quality

72.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-106
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.86 53.0 5.67e-01 70.3% 71.2%
2wzoA01 3.30.160.360 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.77 70.0 5.74e-01 100.0% 69.2%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.75 55.0 4.42e-01 78.4% 64.6%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.71 55.0 4.46e-01 83.8% 85.0%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.70 59.0 4.76e-01 93.2% 55.6%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.70 59.0 3.73e-01 91.9% 54.5%
5kbzB00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.69 52.0 3.35e-01 78.4% 36.5%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 50.0 4.16e-01 79.7% 85.5%
2pgeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.66 45.0 3.78e-01 70.3% 97.6%
2dx0B01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 46.0 4.60e-01 90.5% 73.3%
3klxB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 53.0 4.03e-01 91.9% 55.8%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.64 53.0 4.27e-01 93.2% 57.6%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.64 44.0 4.80e-01 75.7% 86.9%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 56.0 4.33e-01 100.0% 63.6%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.62 52.0 4.21e-01 95.9% 98.7%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 44.0 3.40e-01 75.7% 59.0%
1o7iB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 44.0 3.81e-01 75.7% 57.0%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.61 53.0 5.03e-01 100.0% 89.1%
4q28A00 3.30.160.780 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 48.0 4.23e-01 85.1% 98.2%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.61 48.0 4.38e-01 86.5% 62.7%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.61 48.0 4.56e-01 86.5% 70.8%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 44.0 4.47e-01 75.7% 95.8%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 53.0 4.42e-01 100.0% 54.8%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 51.0 3.24e-01 91.9% 47.8%
1fguB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 41.0 3.72e-01 71.6% 71.4%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 41.0 3.60e-01 71.6% 99.1%
3uiuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 44.0 4.04e-01 78.4% 66.0%
1tw0A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 48.0 3.88e-01 91.9% 65.0%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 52.0 4.29e-01 100.0% 65.2%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 47.0 4.60e-01 86.5% 83.7%
6ka3A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 50.0 4.08e-01 98.6% 66.7%
3omlA03 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 47.0 3.27e-01 90.5% 79.9%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 42.0 3.44e-01 77.0% 93.3%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 45.0 4.03e-01 83.8% 63.1%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.57 51.0 4.04e-01 100.0% 97.4%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 46.0 3.61e-01 91.9% 63.4%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.56 48.0 4.11e-01 100.0% 92.1%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 44.0 4.18e-01 97.3% 72.5%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 45.0 3.58e-01 87.8% 80.5%
4ks7A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 45.0 4.13e-01 89.2% 74.5%
2leqA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 42.0 3.45e-01 83.8% 50.0%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.55 47.0 3.87e-01 97.3% 92.1%
7zvsB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 44.0 4.03e-01 89.2% 77.8%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 42.0 3.52e-01 90.5% 71.7%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 46.0 3.42e-01 100.0% 44.8%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 41.0 3.28e-01 89.2% 47.0%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.52 46.0 3.81e-01 100.0% 81.3%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.51 41.0 4.04e-01 91.9% 97.6%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.19e-01 98.6% 71.9%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4941093 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.77 65.0 5.15e-01 93.2% 52.0%
4953666 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.76 63.0 5.03e-01 90.5% 53.1%
3938605 3131.1.1.1 ↗ a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.75 67.0 5.29e-01 97.3% 62.1%
3427875 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.75 66.0 5.23e-01 100.0% 76.8%
3480143 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.74 64.0 5.07e-01 95.9% 76.7%
4954283 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.73 62.0 4.93e-01 94.6% 51.3%
4310932 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.73 53.0 3.61e-01 77.0% 61.6%
3966459 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.72 61.0 4.90e-01 93.2% 57.1%
3972703 9.1.1.17 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF 0.71 55.0 4.91e-01 83.8% 59.0%
4156336 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.69 50.0 4.14e-01 77.0% 68.5%
3510850 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.68 51.0 4.78e-01 81.1% 65.6%
3279607 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.68 49.0 4.41e-01 77.0% 56.0%
2410020 881.1.1.4 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DcrB 0.67 56.0 4.58e-01 95.9% 56.1%
4988831 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 41.0 4.63e-01 74.3% 83.6%
3669786 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 43.0 4.94e-01 83.8% 100.0%
4996269 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.65 57.0 4.07e-01 100.0% 51.6%
4018089 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.64 56.0 4.82e-01 100.0% 85.8%
144571 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.63 55.0 4.25e-01 97.3% 62.5%
4346250 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.63 56.0 4.57e-01 100.0% 76.4%
3903515 511.1.1.0 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.63 47.0 3.76e-01 81.1% 92.9%
5082343 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.63 44.0 3.09e-01 73.0% 24.8%
4117472 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.63 54.0 4.27e-01 97.3% 58.7%
4957228 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.63 45.0 3.84e-01 86.5% 44.6%
3184125 223.3.1.0 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins 0.62 53.0 4.56e-01 95.9% 62.5%
4289286 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.62 54.0 4.33e-01 97.3% 60.7%
4158830 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.62 52.0 4.40e-01 94.6% 70.0%
3457141 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.62 48.0 3.16e-01 83.8% 40.9%
3243080 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.61 52.0 4.72e-01 100.0% 70.0%
3592221 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 44.0 3.83e-01 77.0% 65.3%
3403106 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.61 53.0 4.17e-01 100.0% 53.3%
5059673 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 44.0 4.03e-01 77.0% 62.0%
3375823 219.1.1.91 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › EDR1 0.60 51.0 3.75e-01 95.9% 93.3%
3832653 331.3.1.1 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 0.60 51.0 4.10e-01 97.3% 61.3%
4978633 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.60 52.0 4.23e-01 100.0% 64.7%
3619070 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.59 51.0 4.04e-01 100.0% 53.3%
3981106 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.59 52.0 4.17e-01 100.0% 56.7%
3671668 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 48.0 3.65e-01 90.5% 86.5%
3965583 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.59 52.0 4.26e-01 100.0% 60.7%
3789706 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.59 51.0 3.99e-01 100.0% 54.1%
3737620 5.1.5.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.59 50.0 3.07e-01 97.3% 54.1%
3828345 219.1.1.91 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › EDR1 0.59 50.0 3.54e-01 95.9% 95.7%
3275868 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 45.0 4.46e-01 85.1% 92.5%
4950969 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.58 50.0 3.07e-01 97.3% 26.0%
3291118 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.58 50.0 4.06e-01 100.0% 62.0%
3375268 5084.5.1.3 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.58 51.0 3.66e-01 98.6% 35.9%
4106226 5.1.4.29 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PD40 0.57 46.0 3.14e-01 91.9% 52.9%
3466098 5.1.4.101 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.57 44.0 3.00e-01 87.8% 46.9%
3509499 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.57 46.0 3.95e-01 87.8% 79.2%
3269232 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 44.0 4.32e-01 85.1% 91.3%
4983588 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 46.0 4.61e-01 89.2% 100.0%
3282978 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.56 49.0 3.89e-01 100.0% 56.6%
3960559 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.56 49.0 4.21e-01 100.0% 70.7%
3484082 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 45.0 3.51e-01 93.2% 56.2%
3675254 5084.5.1.3 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.55 49.0 3.32e-01 98.6% 26.2%
3984944 213.2.1.0 ↗ a+b three layers › Nat/Ivy › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme, Ivy 0.55 45.0 4.31e-01 89.2% 88.2%
3738966 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 44.0 3.00e-01 93.2% 54.5%
4583096 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.54 44.0 3.10e-01 89.2% 89.7%
3283627 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.54 47.0 3.81e-01 100.0% 58.0%
5063778 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.54 45.0 2.83e-01 95.9% 27.1%
4155197 243.3.1.52 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 0.52 43.0 3.24e-01 91.9% 44.7%
2841932 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 43.0 3.70e-01 95.9% 61.1%
3189324 375.1.1.319 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Saf4_Yju2 0.52 37.0 3.86e-01 77.0% 100.0%
3267754 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.51 40.0 3.47e-01 87.8% 76.0%
3409138 222.1.1.35 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas, MFE-2_hydrat-2_N 0.50 42.0 2.81e-01 93.2% 73.4%