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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00181
Bact-VirSR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00181
Identity
- Kingdom:
- phage
Quality
83.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-110
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1k78A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 36.0 | 4.54e-01 | 72.7% | 75.8% |
| 2xrnB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 42.0 | 5.44e-01 | 84.5% | 100.0% |
| 2p8tA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 47.0 | 5.61e-01 | 70.0% | 98.7% |
| 4chuA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 52.0 | 5.00e-01 | 75.5% | 67.5% |
| 1xd7A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 49.0 | 4.82e-01 | 71.8% | 66.4% |
| 2llkA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.69 | 29.0 | 4.23e-01 | 70.9% | 100.0% |
| 2y75A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 50.0 | 4.79e-01 | 76.4% | 66.4% |
| 4em2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 47.0 | 4.16e-01 | 70.9% | 62.0% |
| 3ecoB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 47.0 | 4.42e-01 | 70.9% | 68.2% |
| 4ha8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 38.0 | 4.91e-01 | 73.6% | 100.0% |
| 3bj6B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 46.0 | 4.08e-01 | 70.9% | 59.6% |
| 2fa5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 46.0 | 4.26e-01 | 70.9% | 59.0% |
| 7l1iA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 45.0 | 4.03e-01 | 70.9% | 58.8% |
| 3cuqB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 40.0 | 4.87e-01 | 84.5% | 100.0% |
| 3r0aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 45.0 | 4.43e-01 | 73.6% | 83.3% |
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 43.0 | 4.45e-01 | 74.5% | 73.1% |
| 3e6mA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 45.0 | 4.11e-01 | 73.6% | 61.0% |
| 1q1hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 41.0 | 4.68e-01 | 89.1% | 89.4% |
| 6kf9G01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 44.0 | 5.03e-01 | 90.9% | 98.8% |
| 4rgxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 44.0 | 4.14e-01 | 74.5% | 62.7% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.58 | 35.0 | 4.07e-01 | 76.4% | 85.9% |
| 3f2gA00 | 3.30.450.410 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.56 | 46.0 | 3.73e-01 | 88.2% | 73.2% |
| 2vqcA00 | 1.10.10.1470 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like | 0.55 | 34.0 | 4.07e-01 | 85.5% | 98.6% |
| 6s6hA01 | 1.10.10.2830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 31.0 | 3.17e-01 | 87.3% | 56.0% |
| 6rxaA01 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.53 | 32.0 | 3.58e-01 | 70.9% | 75.9% |
| 2iaiA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 40.0 | 3.79e-01 | 88.2% | 92.6% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3984938 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.72 | 51.0 | 5.75e-01 | 87.3% | 100.0% |
| 3283273 | 101.1.2.112 ↗ | alpha arrays › HTH › HTH › winged helix domain › FtsK_gamma | 0.72 | 47.0 | 5.42e-01 | 70.0% | 91.3% |
| 3164332 | 101.1.2.32 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rrf2 | 0.72 | 52.0 | 4.71e-01 | 75.5% | 58.6% |
| 4992862 | 101.1.6.12 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_23 | 0.71 | 39.0 | 4.56e-01 | 78.2% | 77.3% |
| 4518801 | 101.1.2.112 ↗ | alpha arrays › HTH › HTH › winged helix domain › FtsK_gamma | 0.70 | 44.0 | 5.24e-01 | 94.5% | 92.0% |
| 3920267 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 47.0 | 5.43e-01 | 85.5% | 95.0% |
| 4023460 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 43.0 | 5.20e-01 | 84.5% | 92.0% |
| 4996888 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.68 | 46.0 | 4.65e-01 | 74.5% | 69.1% |
| 4053630 | 101.1.2.32 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rrf2 | 0.68 | 49.0 | 4.41e-01 | 75.5% | 57.3% |
| 4929958 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.67 | 47.0 | 4.60e-01 | 83.6% | 66.4% |
| 4026718 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.67 | 42.0 | 4.95e-01 | 90.0% | 88.7% |
| 4945039 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.66 | 34.0 | 4.28e-01 | 72.7% | 86.7% |
| 2687 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.63 | 43.0 | 4.37e-01 | 74.5% | 69.7% |
| 3205136 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.63 | 42.0 | 4.79e-01 | 90.9% | 88.2% |
| 5076157 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 52.0 | 4.95e-01 | 87.3% | 96.8% |
| 3973615 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.62 | 33.0 | 4.03e-01 | 76.4% | 83.1% |
| 3963064 | 101.1.1.251 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB | 0.62 | 34.0 | 3.60e-01 | 87.3% | 58.0% |
| 1293467 | 101.1.2.32 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rrf2 | 0.62 | 52.0 | 4.84e-01 | 88.2% | 85.7% |
| 5047761 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 45.0 | 4.90e-01 | 75.5% | 100.0% |
| 5070229 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.62 | 45.0 | 4.63e-01 | 84.5% | 79.0% |
| 3493224 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.61 | 42.0 | 4.51e-01 | 93.6% | 81.1% |
| 5023573 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 47.0 | 4.71e-01 | 81.8% | 100.0% |
| 4942472 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 44.0 | 4.26e-01 | 73.6% | 77.5% |
| 4945667 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 44.0 | 4.39e-01 | 82.7% | 76.5% |
| 4135068 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 50.0 | 3.43e-01 | 99.1% | 42.2% |
| 4190752 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.57 | 43.0 | 4.64e-01 | 90.0% | 91.6% |
| 3468223 | 101.1.2.90 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_9 | 0.56 | 47.0 | 3.33e-01 | 91.8% | 55.9% |
| 4946879 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.54 | 42.0 | 4.06e-01 | 85.5% | 95.4% |
| 3306699 | 101.1.2.517 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.53 | 46.0 | 3.12e-01 | 92.7% | 97.7% |
| 3712396 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 36.0 | 3.80e-01 | 70.9% | 89.5% |
| 3783244 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.52 | 45.0 | 3.57e-01 | 94.5% | 85.3% |
| 4158914 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.52 | 40.0 | 3.60e-01 | 81.8% | 92.0% |