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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00211
Bact-VirSR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00211
Identity
- Kingdom:
- phage
Quality
53.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-129
D2
high
residues 175-235
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10077.15 best | DUF2314 | 36.6 | 6.60e-09 | 98.4% | 43.3% |
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b7tA02 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.86 | 62.0 | 6.68e-01 | 100.0% | 88.5% |
| 4a4kA02 | 2.30.30.1160 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 67.0 | 5.08e-01 | 100.0% | 60.9% |
| 7afrX02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.71 | 53.0 | 5.41e-01 | 100.0% | 81.7% |
| 2l1tA00 | 2.30.110.70 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.71 | 62.0 | 5.10e-01 | 96.7% | 79.8% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.69 | 54.0 | 5.28e-01 | 100.0% | 79.1% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 53.0 | 5.01e-01 | 100.0% | 76.3% |
| 3fb9B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 55.0 | 4.90e-01 | 100.0% | 67.9% |
| 2ew0A00 | 3.40.1740.10 | Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like | 0.61 | 53.0 | 3.86e-01 | 100.0% | 80.0% |
| 2gs5A01 | 3.40.1740.10 | Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like | 0.60 | 53.0 | 3.76e-01 | 100.0% | 73.9% |
| 1g2bA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 46.0 | 4.63e-01 | 90.2% | 83.9% |
| 2as9B01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 49.0 | 4.16e-01 | 91.8% | 65.3% |
| 1wczA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 49.0 | 3.99e-01 | 91.8% | 62.6% |
| 1lshA01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.59 | 45.0 | 2.97e-01 | 83.6% | 84.0% |
| 1jmxA02 | 2.40.128.120 | Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 | 0.59 | 50.0 | 4.21e-01 | 100.0% | 90.8% |
| 2mc2A00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.58 | 46.0 | 3.35e-01 | 95.1% | 98.1% |
| 3rwxA02 | 2.40.128.350 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 47.0 | 3.82e-01 | 96.7% | 94.7% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 48.0 | 3.75e-01 | 100.0% | 87.1% |
| 3nwzB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 38.0 | 2.88e-01 | 70.5% | 78.1% |
| 2a15A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 44.0 | 3.51e-01 | 90.2% | 82.0% |
| 2qmiA02 | 2.40.128.210 | Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain | 0.55 | 42.0 | 3.64e-01 | 91.8% | 51.0% |
| 3buuB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.54 | 48.0 | 3.28e-01 | 100.0% | 81.8% |
| 6r3wA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 45.0 | 3.43e-01 | 100.0% | 91.3% |
| 1u17A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 45.0 | 3.24e-01 | 96.7% | 94.6% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.52 | 37.0 | 2.98e-01 | 90.2% | 35.9% |
| 3ir3A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 42.0 | 3.35e-01 | 91.8% | 92.1% |
| 2lmeA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.51 | 37.0 | 3.24e-01 | 85.2% | 47.6% |
| 3rd7A00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.51 | 38.0 | 2.56e-01 | 83.6% | 87.3% |
| 4w78F00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 42.0 | 3.35e-01 | 91.8% | 96.1% |
| 4e1sA00 | 2.40.160.160 | Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain | 0.51 | 40.0 | 2.84e-01 | 93.4% | 39.7% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3272197 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.92 | 87.0 | 7.02e-01 | 100.0% | 61.0% |
| 4004815 | 4.1.1.166 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2314 | 0.92 | 81.0 | 6.28e-01 | 100.0% | 47.2% |
| 4581369 | 4.1.1.166 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2314 | 0.91 | 86.0 | 6.93e-01 | 100.0% | 59.0% |
| 4622062 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.91 | 85.0 | 5.50e-01 | 100.0% | 26.4% |
| 4951886 | 3174.4.1.0 ↗ | beta barrels › Ribosomal protein L14-like › Hypothetical protein NegoA.19184.a N-terminal domain › Hypothetical protein NegoA.19184.a N-terminal domain | 0.87 | 78.0 | 6.78e-01 | 96.7% | 74.4% |
| 3841414 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.81 | 65.0 | 6.26e-01 | 100.0% | 75.7% |
| 3619619 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.80 | 64.0 | 6.08e-01 | 100.0% | 74.3% |
| 4278184 | 4.1.1.52 ↗ | beta barrels › SH3 › SH3 › SH3 › ZapC_C | 0.79 | 69.0 | 6.28e-01 | 100.0% | 72.5% |
| 3494683 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 64.0 | 6.10e-01 | 100.0% | 77.1% |
| 3333322 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.77 | 64.0 | 4.89e-01 | 100.0% | 40.7% |
| 3709279 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 70.0 | 6.08e-01 | 100.0% | 67.8% |
| 3601070 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 69.0 | 6.79e-01 | 100.0% | 92.3% |
| 3368864 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.75 | 62.0 | 6.12e-01 | 100.0% | 84.6% |
| 3595833 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.74 | 67.0 | 5.72e-01 | 100.0% | 63.2% |
| 3217770 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 58.0 | 4.93e-01 | 100.0% | 52.0% |
| 3689576 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 68.0 | 4.92e-01 | 100.0% | 49.7% |
| 4016602 | 4.1.1.179 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF6590 | 0.73 | 66.0 | 4.99e-01 | 100.0% | 76.9% |
| 3313139 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.72 | 65.0 | 4.60e-01 | 100.0% | 42.3% |
| 3812766 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.71 | 65.0 | 6.19e-01 | 100.0% | 87.1% |
| 3629316 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 57.0 | 4.80e-01 | 100.0% | 53.0% |
| 3357709 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.71 | 64.0 | 5.72e-01 | 100.0% | 75.3% |
| 3342793 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.71 | 64.0 | 4.45e-01 | 100.0% | 33.7% |
| 3342814 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.71 | 64.0 | 5.47e-01 | 100.0% | 76.8% |
| 3959465 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.70 | 64.0 | 4.93e-01 | 100.0% | 63.1% |
| 5027789 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.70 | 65.0 | 5.42e-01 | 100.0% | 74.0% |
| 3795384 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 56.0 | 3.81e-01 | 100.0% | 24.7% |
| 3356605 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.70 | 63.0 | 5.52e-01 | 100.0% | 80.0% |
| 3834112 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.70 | 64.0 | 5.78e-01 | 100.0% | 90.0% |
| 3459099 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.67 | 61.0 | 5.02e-01 | 100.0% | 65.7% |
| 3587906 | 4.1.1.46 ↗ | beta barrels › SH3 › SH3 › SH3 › VEG | 0.66 | 56.0 | 5.19e-01 | 100.0% | 73.8% |
| 2978978 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.65 | 58.0 | 5.43e-01 | 100.0% | 81.3% |
| 4251101 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 55.0 | 5.00e-01 | 100.0% | 70.6% |
| 3296140 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.64 | 58.0 | 3.44e-01 | 100.0% | 17.1% |
| 4929472 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 54.0 | 4.96e-01 | 100.0% | 73.8% |
| 4484974 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 54.0 | 4.88e-01 | 100.0% | 74.1% |
| 3600139 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 54.0 | 4.50e-01 | 100.0% | 60.0% |
| 4555816 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 52.0 | 4.69e-01 | 100.0% | 67.1% |
| 3890362 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 53.0 | 5.02e-01 | 91.8% | 85.7% |
| 4466506 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 54.0 | 5.10e-01 | 100.0% | 81.3% |
| 3389662 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.61 | 53.0 | 4.86e-01 | 100.0% | 73.8% |
| 4220126 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.61 | 51.0 | 4.60e-01 | 100.0% | 67.1% |
| 4069560 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 54.0 | 5.07e-01 | 100.0% | 81.3% |
| 3729666 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 52.0 | 4.30e-01 | 100.0% | 53.6% |
| 3592075 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 53.0 | 4.77e-01 | 100.0% | 76.5% |
| 5063188 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.60 | 49.0 | 3.37e-01 | 91.8% | 34.0% |
| 3952986 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.59 | 49.0 | 4.10e-01 | 100.0% | 93.3% |
| 3848399 | 4.8.1.24 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th | 0.58 | 47.0 | 4.59e-01 | 100.0% | 84.3% |
| 3675653 | 4.1.1.239 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O | 0.58 | 49.0 | 4.65e-01 | 100.0% | 89.3% |
| 3282030 | 331.3.1.23 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF5914 | 0.57 | 46.0 | 3.32e-01 | 88.5% | 54.9% |
| 3385337 | 9.3.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › DUF2921_N | 0.57 | 47.0 | 3.48e-01 | 100.0% | 74.7% |
| 3389887 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.56 | 40.0 | 3.68e-01 | 95.1% | 56.5% |
| 5048425 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 48.0 | 4.45e-01 | 100.0% | 90.0% |
| 5012053 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.55 | 48.0 | 4.59e-01 | 100.0% | 83.8% |
| 3639280 | 6.1.1.36 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › RNaseT2L_C | 0.55 | 44.0 | 3.70e-01 | 96.7% | 98.4% |
| 3402051 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.55 | 41.0 | 3.81e-01 | 95.1% | 64.1% |
| 3339625 | 9.1.1.34 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PAP_fibrillin | 0.53 | 43.0 | 3.18e-01 | 93.4% | 65.0% |
| 3399367 | 9.2.1.5 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF7043 | 0.53 | 47.0 | 4.06e-01 | 98.4% | 69.5% |
| 3642325 | 9.1.1.29 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BFA1_C | 0.53 | 45.0 | 3.46e-01 | 100.0% | 86.3% |