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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00238
Bact-VirSR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00238
Identity
- Kingdom:
- phage
Quality
79.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 46-122
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.82 | 62.0 | 5.51e-01 | 79.2% | 61.3% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.82 | 60.0 | 6.02e-01 | 80.5% | 75.6% |
| 1kfdA02 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.81 | 48.0 | 5.02e-01 | 92.2% | 64.8% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.79 | 68.0 | 4.78e-01 | 94.8% | 39.4% |
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.77 | 62.0 | 6.03e-01 | 88.3% | 78.2% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.77 | 56.0 | 4.97e-01 | 77.9% | 54.6% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 55.0 | 5.55e-01 | 80.5% | 77.6% |
| 3jcuZ00 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.75 | 49.0 | 5.33e-01 | 79.2% | 83.6% |
| 2efkA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.74 | 65.0 | 4.51e-01 | 98.7% | 61.5% |
| 3vurA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.74 | 53.0 | 4.62e-01 | 74.0% | 50.4% |
| 2yevC00 | 6.10.280.110 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 53.0 | 5.80e-01 | 77.9% | 92.1% |
| 2dw4A03 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.73 | 58.0 | 5.31e-01 | 92.2% | 65.3% |
| 1vcsA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.73 | 52.0 | 4.74e-01 | 77.9% | 56.9% |
| 3hiuD00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.72 | 54.0 | 4.28e-01 | 87.0% | 40.1% |
| 2qywA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.71 | 49.0 | 4.66e-01 | 75.3% | 60.0% |
| 4b6xA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 52.0 | 5.37e-01 | 79.2% | 91.3% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.70 | 57.0 | 4.85e-01 | 93.5% | 54.8% |
| 3itfA00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.70 | 49.0 | 4.37e-01 | 80.5% | 51.4% |
| 4dylA02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.69 | 57.0 | 5.35e-01 | 92.2% | 74.5% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 55.0 | 5.10e-01 | 88.3% | 79.8% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.68 | 48.0 | 4.65e-01 | 74.0% | 66.3% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.68 | 47.0 | 4.96e-01 | 72.7% | 83.6% |
| 8b70A01 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.68 | 52.0 | 3.30e-01 | 84.4% | 65.6% |
| 2odvA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 48.0 | 4.26e-01 | 83.1% | 51.8% |
| 3o39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.67 | 48.0 | 4.53e-01 | 80.5% | 61.5% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 55.0 | 5.12e-01 | 96.1% | 71.6% |
| 1um8A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 54.0 | 3.75e-01 | 87.0% | 72.2% |
| 3sfvB02 | 6.10.140.2010 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 58.0 | 4.31e-01 | 100.0% | 57.5% |
| 3okqA00 | 1.20.58.1540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain | 0.65 | 56.0 | 4.88e-01 | 100.0% | 76.8% |
| 2kg7B00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.61 | 46.0 | 4.29e-01 | 81.8% | 68.0% |
| 2lpeA01 | 6.10.140.1120 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 41.0 | 4.14e-01 | 74.0% | 79.5% |
| 3h3mA00 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.55 | 40.0 | 3.89e-01 | 79.2% | 68.5% |
| 2prrA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.51 | 38.0 | 3.23e-01 | 79.2% | 81.9% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4129922 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.86 | 64.0 | 5.80e-01 | 83.1% | 60.0% |
| 3475834 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.85 | 57.0 | 5.29e-01 | 74.0% | 55.8% |
| 4059065 | 622.1.1.1 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C | 0.84 | 59.0 | 5.37e-01 | 75.3% | 56.6% |
| 3973453 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.83 | 62.0 | 6.20e-01 | 80.5% | 76.2% |
| 3600361 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.83 | 62.0 | 5.77e-01 | 79.2% | 64.2% |
| 3337008 | 192.2.1.60 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF21A_4th | 0.82 | 75.0 | 6.03e-01 | 98.7% | 72.9% |
| 3599032 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.82 | 75.0 | 5.24e-01 | 100.0% | 57.0% |
| 4182090 | 148.1.3.26 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 | 0.82 | 74.0 | 5.31e-01 | 100.0% | 42.3% |
| 4474737 | 3711.1.1.44 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › Med11 | 0.81 | 62.0 | 5.85e-01 | 83.1% | 68.9% |
| 3663959 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.81 | 64.0 | 5.37e-01 | 88.3% | 50.8% |
| 5069039 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.81 | 55.0 | 4.37e-01 | 75.3% | 37.8% |
| 4048446 | 148.1.3.26 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 | 0.80 | 72.0 | 5.05e-01 | 100.0% | 45.2% |
| 3593785 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.79 | 66.0 | 5.01e-01 | 88.3% | 41.9% |
| 3318812 | 192.8.1.248 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › KIF21A_4th | 0.79 | 73.0 | 5.75e-01 | 100.0% | 77.3% |
| 4936733 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.78 | 71.0 | 6.04e-01 | 98.7% | 76.7% |
| 4652719 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.78 | 65.0 | 6.04e-01 | 93.5% | 72.6% |
| 3172387 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.78 | 65.0 | 5.59e-01 | 88.3% | 59.1% |
| 3402327 | 3755.3.1.324 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF725 | 0.77 | 68.0 | 5.21e-01 | 96.1% | 43.5% |
| 3170639 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.77 | 60.0 | 5.81e-01 | 83.1% | 80.0% |
| 3944950 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.77 | 51.0 | 5.52e-01 | 71.4% | 81.5% |
| 3680604 | 246.3.1.17 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › PF27823 | 0.77 | 67.0 | 4.48e-01 | 96.1% | 26.0% |
| 3191636 | 148.1.3.26 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 | 0.76 | 68.0 | 4.85e-01 | 100.0% | 40.4% |
| 3167298 | 3711.1.1.0 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein | 0.76 | 66.0 | 6.01e-01 | 100.0% | 71.4% |
| 3785092 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.76 | 59.0 | 4.63e-01 | 83.1% | 41.2% |
| 4051951 | 605.2.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 | 0.76 | 63.0 | 5.95e-01 | 92.2% | 75.6% |
| 3432902 | 603.1.1.5 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N | 0.76 | 61.0 | 5.32e-01 | 87.0% | 59.1% |
| 3163896 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.76 | 58.0 | 4.18e-01 | 83.1% | 30.0% |
| 4503293 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.75 | 68.0 | 4.23e-01 | 100.0% | 24.0% |
| 4015699 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.75 | 67.0 | 4.93e-01 | 100.0% | 45.9% |
| 4774272 | 192.1.1.1 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › MCPsignal | 0.75 | 64.0 | 5.87e-01 | 98.7% | 72.3% |
| 3565133 | 3755.3.1.44 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › JMY | 0.75 | 60.0 | 5.17e-01 | 87.0% | 61.7% |
| 4016635 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.73 | 59.0 | 5.50e-01 | 92.2% | 70.0% |
| 4026281 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.73 | 63.0 | 4.75e-01 | 97.4% | 41.6% |
| 3361164 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.73 | 59.0 | 4.33e-01 | 90.9% | 33.2% |
| 4649114 | 3559.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Med22 | 0.72 | 55.0 | 5.11e-01 | 87.0% | 64.0% |
| 3677211 | 109.4.1.91 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec10_HB | 0.72 | 61.0 | 3.60e-01 | 96.1% | 11.5% |
| 3592972 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.71 | 62.0 | 4.70e-01 | 100.0% | 68.7% |
| 4576425 | 4207.1.1.112 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › ING | 0.70 | 61.0 | 5.50e-01 | 100.0% | 72.7% |
| 3205079 | 148.1.3.26 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 | 0.69 | 60.0 | 4.41e-01 | 100.0% | 43.6% |
| 4602773 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.69 | 52.0 | 4.35e-01 | 81.8% | 45.9% |
| 4023701 | 148.1.3.261 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small, AAA_lid_9 | 0.69 | 61.0 | 4.12e-01 | 100.0% | 31.3% |
| 3927675 | 2004.1.1.600 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn, AAA_21 | 0.63 | 55.0 | 3.31e-01 | 98.7% | 76.3% |
| 3740818 | 109.54.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 | 0.61 | 48.0 | 3.95e-01 | 85.7% | 45.5% |