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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00258
Bact-VirSR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00258
Identity
- Kingdom:
- phage
Quality
92.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-109
Domain cluster:
rep: IMGVR_UViG_3300028564_000083-3300028564-Ga0255344_100350621__D115-222
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ap4B02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.80 | 74.0 | 6.74e-01 | 100.0% | 87.9% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.80 | 75.0 | 7.21e-01 | 100.0% | 90.8% |
| 6j8yC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.80 | 74.0 | 5.51e-01 | 100.0% | 45.9% |
| 5agvA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.80 | 74.0 | 6.91e-01 | 100.0% | 90.1% |
| 1vpkA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.79 | 74.0 | 6.93e-01 | 100.0% | 86.7% |
| 4trtA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.78 | 72.0 | 7.00e-01 | 100.0% | 93.3% |
| 1rwzA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.78 | 72.0 | 5.45e-01 | 100.0% | 45.9% |
| 3ifvC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.78 | 72.0 | 5.46e-01 | 100.0% | 47.5% |
| 3pweA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.78 | 72.0 | 6.89e-01 | 100.0% | 90.2% |
| 5wceA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.78 | 72.0 | 6.75e-01 | 100.0% | 90.7% |
| 4trtA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.78 | 72.0 | 6.91e-01 | 100.0% | 88.5% |
| 3t0pA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.78 | 72.0 | 6.07e-01 | 100.0% | 63.4% |
| 5wceA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.78 | 71.0 | 6.92e-01 | 100.0% | 92.4% |
| 4tr6A01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.78 | 72.0 | 5.98e-01 | 100.0% | 65.6% |
| 2ix2B00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.77 | 71.0 | 5.39e-01 | 100.0% | 45.7% |
| 1plqA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.77 | 71.0 | 5.31e-01 | 100.0% | 46.1% |
| 3p91A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.77 | 71.0 | 5.37e-01 | 100.0% | 44.5% |
| 1t6lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.77 | 71.0 | 5.35e-01 | 100.0% | 45.4% |
| 1sxjH02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.77 | 70.0 | 6.66e-01 | 100.0% | 93.0% |
| 1vpkA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.77 | 71.0 | 6.86e-01 | 100.0% | 93.3% |
| 1u7bA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.77 | 70.0 | 5.30e-01 | 100.0% | 45.8% |
| 2avtA02 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.76 | 70.0 | 5.65e-01 | 100.0% | 57.3% |
| 5agvA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.76 | 70.0 | 6.71e-01 | 100.0% | 87.1% |
| 8dqwG01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.76 | 69.0 | 5.83e-01 | 99.1% | 74.3% |
| 6ptrB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.76 | 70.0 | 6.90e-01 | 100.0% | 97.3% |
| 1dmlA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.75 | 69.0 | 5.11e-01 | 100.0% | 48.7% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.75 | 69.0 | 6.85e-01 | 100.0% | 96.5% |
| 4rkiA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.75 | 68.0 | 6.43e-01 | 100.0% | 90.8% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.75 | 69.0 | 5.62e-01 | 100.0% | 56.5% |
| 1ud9A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.75 | 68.0 | 5.22e-01 | 100.0% | 46.7% |
| 1ge8A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.75 | 68.0 | 5.22e-01 | 100.0% | 47.5% |
| 3a1jB00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.75 | 68.0 | 5.04e-01 | 100.0% | 41.6% |
| 1jqlA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.74 | 67.0 | 6.53e-01 | 100.0% | 92.4% |
| 5aguA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.74 | 68.0 | 6.43e-01 | 100.0% | 92.9% |
| 4trtA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.72 | 65.0 | 6.36e-01 | 100.0% | 90.8% |
| 2hqyA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 37.0 | 3.52e-01 | 100.0% | 51.5% |
| 3kljA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.56 | 27.0 | 3.11e-01 | 77.8% | 59.0% |
| 4rzkA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 38.0 | 4.12e-01 | 76.9% | 86.2% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.55 | 41.0 | 4.18e-01 | 100.0% | 83.5% |
| 2n93A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 41.0 | 3.90e-01 | 79.6% | 71.5% |
| 3eb8B01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.54 | 27.0 | 3.55e-01 | 89.8% | 86.9% |
| 2qm4A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.53 | 40.0 | 3.73e-01 | 82.4% | 87.4% |
ECOD (89)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1013950 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.81 | 75.0 | 7.18e-01 | 98.1% | 89.3% |
| 3397928 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.81 | 74.0 | 7.08e-01 | 100.0% | 95.2% |
| 4069893 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.81 | 75.0 | 7.10e-01 | 100.0% | 89.6% |
| 3963789 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.80 | 75.0 | 7.24e-01 | 100.0% | 93.3% |
| 5977 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.80 | 75.0 | 7.21e-01 | 100.0% | 90.8% |
| 4460660 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.80 | 74.0 | 6.85e-01 | 100.0% | 88.9% |
| 2141304 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.80 | 74.0 | 6.88e-01 | 100.0% | 93.1% |
| 4083029 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.80 | 74.0 | 7.04e-01 | 100.0% | 89.6% |
| 3722114 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.79 | 73.0 | 6.41e-01 | 100.0% | 91.0% |
| 4934002 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.79 | 73.0 | 6.86e-01 | 100.0% | 88.5% |
| 4591776 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.79 | 73.0 | 6.86e-01 | 100.0% | 87.7% |
| 2392242 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.79 | 69.0 | 6.83e-01 | 100.0% | 89.4% |
| 4608521 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.79 | 72.0 | 5.85e-01 | 100.0% | 74.5% |
| 5978 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.79 | 74.0 | 7.04e-01 | 100.0% | 90.2% |
| 4939066 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.79 | 73.0 | 6.85e-01 | 100.0% | 89.1% |
| 5074320 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.79 | 72.0 | 6.78e-01 | 100.0% | 91.5% |
| 4660283 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.79 | 73.0 | 6.92e-01 | 100.0% | 93.6% |
| 4212381 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.79 | 73.0 | 6.70e-01 | 100.0% | 85.9% |
| 5010672 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.79 | 72.0 | 6.98e-01 | 100.0% | 94.2% |
| 4194202 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.79 | 72.0 | 6.90e-01 | 100.0% | 89.6% |
| 3478161 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.78 | 71.0 | 6.63e-01 | 100.0% | 92.6% |
| 5043507 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.78 | 72.0 | 6.95e-01 | 100.0% | 95.8% |
| 5028024 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.78 | 72.0 | 6.77e-01 | 100.0% | 86.9% |
| 5033948 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.78 | 72.0 | 6.76e-01 | 100.0% | 86.2% |
| 144176 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.78 | 73.0 | 6.92e-01 | 100.0% | 91.1% |
| 3015240 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.78 | 72.0 | 6.95e-01 | 100.0% | 91.0% |
| 4517015 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.78 | 72.0 | 6.85e-01 | 100.0% | 91.1% |
| 5991 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.78 | 72.0 | 6.92e-01 | 100.0% | 91.8% |
| 5039027 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.78 | 72.0 | 6.93e-01 | 100.0% | 92.5% |
| 2492036 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.78 | 72.0 | 6.76e-01 | 100.0% | 87.6% |
| 4437554 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.78 | 71.0 | 6.81e-01 | 100.0% | 90.4% |
| 4372908 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.78 | 72.0 | 6.84e-01 | 100.0% | 88.0% |
| 3715457 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.78 | 72.0 | 6.35e-01 | 100.0% | 93.4% |
| 4976500 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.78 | 72.0 | 6.77e-01 | 100.0% | 89.8% |
| 4050655 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.78 | 72.0 | 6.73e-01 | 100.0% | 86.2% |
| 3281112 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.77 | 71.0 | 6.90e-01 | 99.1% | 92.5% |
| 4941929 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.77 | 71.0 | 6.73e-01 | 100.0% | 89.8% |
| 3256904 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.77 | 71.0 | 6.78e-01 | 100.0% | 94.4% |
| 4102438 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.77 | 71.0 | 6.90e-01 | 100.0% | 92.5% |
| 5011281 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.77 | 71.0 | 6.76e-01 | 100.0% | 91.2% |
| 143428 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.77 | 71.0 | 6.83e-01 | 100.0% | 90.8% |
| 5037345 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.77 | 71.0 | 6.61e-01 | 100.0% | 90.2% |
| 4038410 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.77 | 70.0 | 6.42e-01 | 100.0% | 92.9% |
| 3932751 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.77 | 71.0 | 6.65e-01 | 100.0% | 90.8% |
| 4055466 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.77 | 71.0 | 6.74e-01 | 100.0% | 91.9% |
| 4480621 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.77 | 72.0 | 6.91e-01 | 100.0% | 90.8% |
| 3839477 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.77 | 71.0 | 6.75e-01 | 100.0% | 91.2% |
| 3932752 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.77 | 70.0 | 6.71e-01 | 100.0% | 91.2% |
| 3292092 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.77 | 71.0 | 6.56e-01 | 100.0% | 91.8% |
| 4500973 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.77 | 70.0 | 6.76e-01 | 100.0% | 91.1% |
| 2987540 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.77 | 71.0 | 6.64e-01 | 100.0% | 83.1% |
| 1290662 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.77 | 70.0 | 6.39e-01 | 100.0% | 83.2% |
| 4860663 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.77 | 71.0 | 6.46e-01 | 100.0% | 79.3% |
| 2878147 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.77 | 70.0 | 6.47e-01 | 100.0% | 84.7% |
| 4456195 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.77 | 70.0 | 6.80e-01 | 100.0% | 94.2% |
| 3387590 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.77 | 68.0 | 6.68e-01 | 100.0% | 90.4% |
| 2588759 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.76 | 70.0 | 6.76e-01 | 100.0% | 94.2% |
| 4991675 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.76 | 70.0 | 6.68e-01 | 100.0% | 92.0% |
| 5029787 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.76 | 70.0 | 6.76e-01 | 100.0% | 91.7% |
| 1871494 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.76 | 70.0 | 6.78e-01 | 100.0% | 90.9% |
| 2325189 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.76 | 69.0 | 6.40e-01 | 100.0% | 88.3% |
| 3251045 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.76 | 70.0 | 6.17e-01 | 100.0% | 76.6% |
| 2492033 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.76 | 70.0 | 6.38e-01 | 100.0% | 85.7% |
| 143267 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.76 | 69.0 | 6.57e-01 | 100.0% | 91.3% |
| 4234515 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.76 | 69.0 | 6.70e-01 | 100.0% | 92.5% |
| 4876748 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.76 | 69.0 | 6.63e-01 | 100.0% | 88.7% |
| 4047098 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.75 | 69.0 | 6.70e-01 | 100.0% | 94.2% |
| 4934001 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.75 | 68.0 | 6.53e-01 | 100.0% | 93.6% |
| 4026069 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.75 | 69.0 | 6.37e-01 | 100.0% | 88.9% |
| 3251867 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.75 | 68.0 | 6.43e-01 | 100.0% | 90.0% |
| 159555 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.75 | 69.0 | 6.55e-01 | 100.0% | 89.0% |
| 426904 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.75 | 68.0 | 6.57e-01 | 100.0% | 89.4% |
| 5037314 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.75 | 68.0 | 6.56e-01 | 99.1% | 94.2% |
| 4943405 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.75 | 68.0 | 6.50e-01 | 100.0% | 93.6% |
| 4315973 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.74 | 68.0 | 6.49e-01 | 100.0% | 92.0% |
| 4998585 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.74 | 68.0 | 6.56e-01 | 100.0% | 91.7% |
| 4633559 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.74 | 68.0 | 6.39e-01 | 100.0% | 89.8% |
| 2878142 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.74 | 67.0 | 6.47e-01 | 100.0% | 91.1% |
| 1871497 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.74 | 67.0 | 6.51e-01 | 100.0% | 90.8% |
| 4027851 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.73 | 66.0 | 5.97e-01 | 100.0% | 91.7% |
| 3507498 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.73 | 65.0 | 5.89e-01 | 100.0% | 88.7% |
| 4995744 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.70 | 64.0 | 6.12e-01 | 100.0% | 88.6% |
| 4668791 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.60 | 29.0 | 3.03e-01 | 100.0% | 44.8% |
| 5069810 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.58 | 29.0 | 3.23e-01 | 100.0% | 58.7% |
| 161224 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.58 | 29.0 | 3.01e-01 | 100.0% | 47.0% |
| 5002276 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.57 | 35.0 | 3.97e-01 | 79.6% | 86.7% |
| 5005273 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.54 | 36.0 | 3.93e-01 | 75.9% | 81.8% |
| 5040124 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.54 | 36.0 | 3.85e-01 | 76.9% | 76.8% |
| 5056600 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.53 | 35.0 | 3.42e-01 | 86.1% | 60.8% |
D2
high
residues 128-238
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vpkA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.83 | 77.0 | 7.28e-01 | 100.0% | 85.2% |
| 4trtA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.83 | 74.0 | 7.24e-01 | 100.0% | 88.2% |
| 5agvA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.82 | 73.0 | 7.04e-01 | 100.0% | 85.5% |
| 5wceA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.81 | 76.0 | 7.21e-01 | 100.0% | 88.4% |
| 3pweA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.80 | 73.0 | 7.07e-01 | 100.0% | 87.8% |
| 3t0pA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.80 | 72.0 | 6.14e-01 | 100.0% | 62.8% |
| 4trtA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.80 | 71.0 | 6.87e-01 | 100.0% | 86.9% |
| 5agvA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.78 | 73.0 | 6.90e-01 | 100.0% | 90.1% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.77 | 69.0 | 6.74e-01 | 100.0% | 89.2% |
| 4tr6A01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.77 | 72.0 | 6.00e-01 | 100.0% | 63.9% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.77 | 69.0 | 6.90e-01 | 100.0% | 94.7% |
| 1rwzA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.73 | 66.0 | 5.00e-01 | 100.0% | 44.3% |
| 2ix2B00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.72 | 66.0 | 5.05e-01 | 100.0% | 45.3% |
| 2ix2A01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.69 | 63.0 | 4.98e-01 | 100.0% | 49.8% |
| 6j8yC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.69 | 63.0 | 4.78e-01 | 100.0% | 46.7% |
| 3hslX00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.66 | 58.0 | 4.37e-01 | 100.0% | 47.4% |
| 2yyzA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.64 | 34.0 | 4.43e-01 | 98.2% | 96.6% |
| 2z0lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.64 | 58.0 | 4.23e-01 | 100.0% | 44.3% |
| 4o5vA03 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.60 | 31.0 | 3.60e-01 | 100.0% | 69.7% |
| 6bogA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 25.0 | 3.32e-01 | 100.0% | 76.9% |
| 5i4eA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.56 | 22.0 | 3.26e-01 | 98.2% | 82.6% |
| 1lckA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 25.0 | 3.36e-01 | 99.1% | 83.1% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995742 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.84 | 71.0 | 7.16e-01 | 99.1% | 90.0% |
| 4460376 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.84 | 76.0 | 7.43e-01 | 100.0% | 89.2% |
| 5978 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.83 | 77.0 | 7.40e-01 | 100.0% | 88.6% |
| 4463778 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.83 | 76.0 | 7.39e-01 | 100.0% | 90.0% |
| 1549270 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.83 | 74.0 | 7.29e-01 | 100.0% | 89.7% |
| 3015240 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.82 | 76.0 | 7.32e-01 | 100.0% | 88.5% |
| 4194202 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.82 | 76.0 | 7.28e-01 | 100.0% | 87.2% |
| 3387600 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.81 | 74.0 | 7.17e-01 | 100.0% | 89.2% |
| 1871494 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.81 | 73.0 | 7.14e-01 | 100.0% | 88.4% |
| 4251800 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.81 | 73.0 | 6.93e-01 | 100.0% | 82.3% |
| 2987540 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.80 | 72.0 | 6.82e-01 | 100.0% | 81.5% |
| 144176 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.80 | 75.0 | 7.20e-01 | 100.0% | 88.7% |
| 4480621 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.80 | 72.0 | 7.02e-01 | 100.0% | 88.3% |
| 3388280 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.80 | 71.0 | 6.97e-01 | 100.0% | 87.5% |
| 4102438 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.80 | 73.0 | 7.12e-01 | 100.0% | 90.0% |
| 3015241 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.80 | 73.0 | 7.12e-01 | 100.0% | 90.8% |
| 4860663 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.80 | 73.0 | 6.67e-01 | 100.0% | 77.1% |
| 4650306 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.80 | 72.0 | 7.05e-01 | 100.0% | 90.0% |
| 1549269 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.80 | 71.0 | 6.89e-01 | 100.0% | 87.6% |
| 4083029 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.79 | 73.0 | 7.01e-01 | 100.0% | 87.2% |
| 4991612 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 28.0 | 3.58e-01 | 100.0% | 54.3% |
| 5977 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.77 | 69.0 | 6.74e-01 | 100.0% | 89.2% |
| 4234515 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.77 | 70.0 | 6.81e-01 | 100.0% | 90.8% |
| 4926837 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 24.0 | 3.28e-01 | 94.6% | 53.3% |
| 4927544 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 24.0 | 4.16e-01 | 91.9% | 97.1% |
| 136536 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.72 | 65.0 | 6.31e-01 | 100.0% | 88.5% |
| 3719938 | 227.1.1.17 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N | 0.71 | 66.0 | 6.05e-01 | 100.0% | 88.6% |
| 4944397 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 24.0 | 3.55e-01 | 97.3% | 66.0% |
| 3613685 | 227.1.1.17 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N | 0.70 | 65.0 | 5.99e-01 | 100.0% | 88.6% |
| 4951973 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 28.0 | 3.82e-01 | 100.0% | 72.7% |
| 4119222 | 375.1.1.135 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Lar_restr_allev | 0.68 | 27.0 | 3.91e-01 | 99.1% | 80.0% |
| 5031337 | 375.8.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B | 0.66 | 24.0 | 3.88e-01 | 91.0% | 94.9% |
| 1178584 | 227.1.1.13 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc | 0.66 | 59.0 | 5.39e-01 | 100.0% | 93.2% |
| 5066808 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.55 | 39.0 | 3.78e-01 | 97.3% | 65.0% |
| 4180663 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.53 | 29.0 | 2.80e-01 | 84.7% | 43.2% |
| 3166329 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.53 | 28.0 | 2.78e-01 | 84.7% | 44.2% |
| 4883516 | 2.11.1.1 ↗ | beta barrels › OB-fold › Antifungal protein (AGAFP) › Antifungal protein (AGAFP) › Antifungal_prot | 0.52 | 28.0 | 3.64e-01 | 87.4% | 98.3% |
| 4241499 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.52 | 42.0 | 4.38e-01 | 89.2% | 99.0% |
| 3374952 | 375.4.1.5 ↗ | few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like › RPA_interact_C | 0.52 | 38.0 | 4.20e-01 | 85.6% | 100.0% |
| 4971601 | 241.14.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C | 0.52 | 27.0 | 3.29e-01 | 71.2% | 78.6% |
| 4030967 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.51 | 42.0 | 4.19e-01 | 89.2% | 92.0% |
| 5033222 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.51 | 33.0 | 3.38e-01 | 98.2% | 66.7% |
| 4630148 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.51 | 28.0 | 2.74e-01 | 84.7% | 44.0% |
| 5061180 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.51 | 32.0 | 3.45e-01 | 99.1% | 73.7% |
| 5035483 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.51 | 37.0 | 3.17e-01 | 74.8% | 51.2% |
| 4926929 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 25.0 | 3.35e-01 | 91.9% | 94.5% |
D3
high
residues 257-376
Domain cluster:
rep: IMGVR_UViG_3300033990_000272-3300033990-Ga0373184_0008483_4516_5451__D198-306
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vpkA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.87 | 79.0 | 7.96e-01 | 100.0% | 95.0% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.86 | 77.0 | 6.37e-01 | 100.0% | 57.5% |
| 1jqlA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.86 | 77.0 | 7.81e-01 | 100.0% | 95.0% |
| 4trtA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.85 | 76.0 | 7.59e-01 | 100.0% | 91.0% |
| 4trtA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.85 | 77.0 | 7.76e-01 | 99.2% | 95.0% |
| 5wceA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.84 | 76.0 | 7.65e-01 | 100.0% | 95.0% |
| 2avtA02 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.84 | 78.0 | 6.37e-01 | 100.0% | 58.3% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.83 | 74.0 | 7.65e-01 | 99.2% | 98.2% |
| 5agvA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.82 | 73.0 | 7.25e-01 | 100.0% | 89.5% |
| 3t0pA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.81 | 72.0 | 6.29e-01 | 100.0% | 65.1% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.81 | 72.0 | 7.24e-01 | 100.0% | 93.3% |
| 2avtB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.81 | 73.0 | 6.35e-01 | 100.0% | 66.3% |
| 3pweA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.80 | 71.0 | 7.12e-01 | 100.0% | 91.9% |
| 4rkiA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.77 | 73.0 | 7.11e-01 | 100.0% | 92.3% |
| 4tr6A01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.77 | 73.0 | 6.23e-01 | 100.0% | 66.7% |
| 1sxjH01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.76 | 71.0 | 7.06e-01 | 99.2% | 96.0% |
| 1t6lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.76 | 68.0 | 5.26e-01 | 98.3% | 46.2% |
| 1u7bA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.75 | 71.0 | 5.42e-01 | 100.0% | 47.8% |
| 6ap4B02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.73 | 68.0 | 6.46e-01 | 100.0% | 89.4% |
| 2ix2A01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.71 | 62.0 | 4.97e-01 | 96.7% | 50.2% |
| 1dmlA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.71 | 65.0 | 4.95e-01 | 100.0% | 44.6% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.59 | 42.0 | 4.53e-01 | 98.3% | 86.4% |
| 1jnrB02 | 6.20.260.10 | Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain | 0.56 | 21.0 | 2.52e-01 | 94.2% | 48.2% |
| 3ocrA00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.54 | 37.0 | 2.95e-01 | 99.2% | 33.1% |
| 1ikpA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 41.0 | 3.34e-01 | 100.0% | 43.9% |
| 3t69A01 | 3.30.420.300 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain | 0.51 | 26.0 | 3.27e-01 | 78.3% | 80.0% |
| 3lmlA03 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 33.0 | 3.90e-01 | 98.3% | 94.1% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3015239 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.88 | 77.0 | 7.82e-01 | 100.0% | 92.4% |
| 2392242 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.87 | 73.0 | 7.55e-01 | 100.0% | 92.0% |
| 4650779 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.86 | 79.0 | 7.83e-01 | 100.0% | 92.0% |
| 4606763 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.86 | 77.0 | 7.74e-01 | 99.2% | 93.3% |
| 426904 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.85 | 77.0 | 7.64e-01 | 100.0% | 91.1% |
| 1549269 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.85 | 76.0 | 7.62e-01 | 100.0% | 91.7% |
| 4650306 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.85 | 77.0 | 7.72e-01 | 100.0% | 94.2% |
| 1549271 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.85 | 77.0 | 7.68e-01 | 99.2% | 92.7% |
| 4162061 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.84 | 78.0 | 7.80e-01 | 100.0% | 94.3% |
| 4437554 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.84 | 77.0 | 7.60e-01 | 99.2% | 91.2% |
| 4360456 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.84 | 77.0 | 7.51e-01 | 100.0% | 89.2% |
| 4542774 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.84 | 75.0 | 7.56e-01 | 98.3% | 94.2% |
| 4480621 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.83 | 74.0 | 7.46e-01 | 100.0% | 92.5% |
| 2987540 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.83 | 74.0 | 7.17e-01 | 100.0% | 85.4% |
| 3387590 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.83 | 71.0 | 7.25e-01 | 100.0% | 93.0% |
| 1871494 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.82 | 74.0 | 7.40e-01 | 100.0% | 92.6% |
| 3387600 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.82 | 74.0 | 7.42e-01 | 100.0% | 93.3% |
| 3015241 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.82 | 73.0 | 7.39e-01 | 100.0% | 94.1% |
| 5039026 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.82 | 71.0 | 7.18e-01 | 100.0% | 90.8% |
| 4508401 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.81 | 76.0 | 7.48e-01 | 100.0% | 93.6% |
| 4251800 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.81 | 73.0 | 7.06e-01 | 100.0% | 86.2% |
| 4234515 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.81 | 74.0 | 7.46e-01 | 100.0% | 95.0% |
| 2878151 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.81 | 72.0 | 7.27e-01 | 100.0% | 92.6% |
| 4047098 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.81 | 74.0 | 7.48e-01 | 100.0% | 95.8% |
| 5977 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.81 | 72.0 | 7.24e-01 | 100.0% | 93.3% |
| 2878147 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.80 | 77.0 | 7.28e-01 | 100.0% | 88.3% |
| 4102438 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.80 | 72.0 | 7.25e-01 | 100.0% | 94.2% |
| 3613685 | 227.1.1.17 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N | 0.80 | 76.0 | 7.18e-01 | 100.0% | 92.1% |
| 5074321 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.80 | 72.0 | 7.12e-01 | 100.0% | 91.2% |
| 4407599 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.80 | 76.0 | 7.54e-01 | 100.0% | 96.0% |
| 4860663 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.80 | 72.0 | 6.76e-01 | 100.0% | 80.7% |
| 2325189 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.80 | 76.0 | 7.21e-01 | 100.0% | 90.5% |
| 4315973 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.79 | 74.0 | 7.30e-01 | 100.0% | 93.6% |
| 4027851 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.79 | 74.0 | 6.92e-01 | 100.0% | 93.8% |
| 3787700 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.79 | 73.0 | 6.60e-01 | 98.3% | 96.8% |
| 5000467 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.77 | 72.0 | 6.95e-01 | 100.0% | 95.6% |
| 3936915 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.77 | 73.0 | 7.08e-01 | 100.0% | 94.6% |
| 144176 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.76 | 69.0 | 6.90e-01 | 100.0% | 92.7% |
| 159555 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.76 | 69.0 | 6.78e-01 | 100.0% | 90.6% |
| 1013950 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.76 | 66.0 | 6.58e-01 | 96.7% | 90.2% |
| 3596476 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.75 | 69.0 | 6.48e-01 | 98.3% | 95.1% |
| 1178584 | 227.1.1.13 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc | 0.75 | 69.0 | 6.41e-01 | 98.3% | 93.8% |
| 3719897 | 227.1.1.18 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C | 0.74 | 66.0 | 6.55e-01 | 95.0% | 91.2% |
| 3407531 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.74 | 69.0 | 6.64e-01 | 100.0% | 88.9% |
| 3932752 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.72 | 66.0 | 6.58e-01 | 100.0% | 94.4% |
| 3614410 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.72 | 67.0 | 6.11e-01 | 100.0% | 85.7% |
| 3230926 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.72 | 66.0 | 6.44e-01 | 100.0% | 91.5% |
| 71028 | 227.1.1.5 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_UL42 | 0.70 | 65.0 | 6.31e-01 | 100.0% | 94.7% |
| 1178585 | 227.1.1.13 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc | 0.65 | 59.0 | 5.59e-01 | 100.0% | 93.6% |
| 3944465 | 809.1.1.7 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF6392 | 0.64 | 31.0 | 3.63e-01 | 100.0% | 64.7% |
| 3980370 | 241.13.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA | 0.57 | 44.0 | 4.24e-01 | 82.5% | 74.3% |
| 3598079 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.55 | 42.0 | 4.08e-01 | 100.0% | 71.9% |
| 3585016 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.54 | 28.0 | 3.65e-01 | 92.5% | 98.3% |
| 3782651 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.53 | 34.0 | 4.04e-01 | 95.8% | 98.8% |