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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00314

Bact-Vir

SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00314

Identity

Kingdom:
phage

Quality

95.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-46_168-222
PDB
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lsgA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 33.0 4.36e-01 78.5% 100.0%
3ih6E00 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.59 43.0 3.49e-01 76.3% 78.0%
4mloA03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 34.0 4.02e-01 82.8% 85.2%
1x3aA00 1.10.3970.10 Mainly Alpha › Orthogonal Bundle › BSD domain-like fold › BSD domain 0.56 41.0 4.02e-01 88.2% 72.0%
1hr6B02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 41.0 3.16e-01 77.4% 75.5%
2k9sA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 33.0 3.17e-01 78.5% 49.5%
1hr7C02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.54 39.0 3.03e-01 76.3% 65.8%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 31.0 3.57e-01 74.2% 85.2%
3ccyA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 38.0 3.36e-01 76.3% 64.6%
2mg4A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 31.0 3.52e-01 93.5% 78.8%
4r30A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 37.0 3.12e-01 77.4% 57.5%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.88e-01 81.7% 90.1%
1htjF00 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.50 43.0 3.49e-01 95.7% 95.1%
1guxB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.50 41.0 3.60e-01 90.3% 71.6%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4192695 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.65 35.0 4.60e-01 79.6% 98.0%
4007503 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.63 33.0 4.39e-01 78.5% 96.0%
4009601 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.63 35.0 3.93e-01 79.6% 71.4%
1758881 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.62 35.0 3.99e-01 79.6% 74.6%
4995680 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.61 34.0 4.16e-01 93.5% 86.7%
3969859 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.60 34.0 4.09e-01 82.8% 85.0%
3982083 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.60 33.0 4.30e-01 79.6% 100.0%
3944775 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.59 34.0 4.08e-01 81.7% 86.7%
3971441 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 33.0 3.90e-01 78.5% 81.0%
3280590 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.59 34.0 4.06e-01 81.7% 88.3%
4064919 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.58 33.0 3.87e-01 79.6% 79.4%
3272971 4299.1.1.1 alpha arrays › BSD domain › BSD domain › BSD domain › BSD 0.58 43.0 4.55e-01 89.2% 90.4%
3387591 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.58 34.0 4.02e-01 84.9% 84.6%
3972910 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.57 35.0 4.03e-01 78.5% 86.2%
3283005 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.57 33.0 4.06e-01 82.8% 94.5%
3979666 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.57 33.0 3.97e-01 80.6% 88.3%
4952332 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.56 40.0 3.69e-01 76.3% 75.4%
4007664 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.56 34.0 3.82e-01 82.8% 80.0%
1762220 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.55 33.0 4.06e-01 82.8% 96.6%
3289678 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.55 35.0 4.07e-01 86.0% 98.3%
D2 high residues 49-164
PDB
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ofiA00 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.85 80.0 6.75e-01 100.0% 79.8%
1ornA01 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.81 68.0 6.93e-01 95.7% 92.0%
1kg2A02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.79 66.0 6.71e-01 95.7% 91.1%
1keaA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.77 64.0 6.51e-01 95.7% 91.2%
4uobA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.76 69.0 6.73e-01 98.3% 96.8%
3s6iA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.76 69.0 6.96e-01 98.3% 97.4%
2h56A02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.75 67.0 6.84e-01 98.3% 97.4%
3f0zA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.74 65.0 6.48e-01 94.8% 97.5%
1pu6A02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.73 65.0 6.38e-01 95.7% 91.9%
4unfA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.73 65.0 6.48e-01 95.7% 94.9%
1ngnA00 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.69 62.0 5.79e-01 100.0% 78.5%
4is7A02 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.65 40.0 4.81e-01 71.6% 98.6%
4z7xB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 49.0 4.03e-01 81.9% 67.3%
4g84A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.61 54.0 3.86e-01 100.0% 33.6%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.57 32.0 3.96e-01 93.1% 93.9%
3tqgB01 1.10.580.10 Mainly Alpha › Orthogonal Bundle › Citrate Synthase; domain 1 › Citrate Synthase, domain 1 0.56 45.0 3.50e-01 85.3% 81.2%
2k3nA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.55 42.0 3.79e-01 100.0% 58.1%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.53 33.0 3.87e-01 73.3% 87.1%
1z2iA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.52 38.0 4.15e-01 97.4% 94.6%
3hibA01 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.52 37.0 3.75e-01 74.1% 87.3%
1nt2B03 1.10.246.90 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Nop domain 0.51 39.0 4.12e-01 88.8% 96.9%
5jcpB01 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.51 37.0 3.18e-01 87.9% 45.6%
1qdbA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.50 33.0 3.15e-01 90.5% 53.8%
6p73A02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.50 34.0 3.21e-01 93.1% 55.9%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4951119 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.83 69.0 5.40e-01 95.7% 44.3%
4943211 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.82 70.0 5.54e-01 95.7% 47.9%
3387611 102.1.2.2 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD,EndIII_4Fe-2S 0.82 69.0 5.57e-01 95.7% 50.2%
4029571 102.1.2.8 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD 0.81 71.0 5.52e-01 99.1% 45.5%
4179240 102.1.2.12 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD,EndIII_4Fe-2S 0.81 68.0 5.47e-01 95.7% 47.9%
4468492 102.1.2.12 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD,EndIII_4Fe-2S 0.81 68.0 5.46e-01 94.8% 48.6%
3024 102.1.2.8 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD 0.81 68.0 5.45e-01 95.7% 48.1%
4963640 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.81 68.0 5.35e-01 95.7% 45.8%
3988104 102.1.2.8 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD 0.81 67.0 5.50e-01 95.7% 50.2%
5062011 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.80 67.0 6.56e-01 95.7% 82.4%
5075943 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.80 67.0 5.45e-01 95.7% 49.5%
4346154 102.1.2.2 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD,EndIII_4Fe-2S 0.80 67.0 5.43e-01 95.7% 49.0%
48277 102.1.2.12 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD,EndIII_4Fe-2S 0.80 67.0 5.41e-01 95.7% 48.8%
3597356 102.1.2.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.80 68.0 5.38e-01 98.3% 46.1%
4997835 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.80 67.0 5.41e-01 95.7% 49.0%
5033046 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.79 66.0 5.29e-01 95.7% 47.9%
3739101 102.1.2.12 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD,EndIII_4Fe-2S 0.78 73.0 5.33e-01 100.0% 41.8%
5018320 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.78 66.0 5.17e-01 99.1% 44.5%
4998466 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.77 68.0 5.43e-01 95.7% 50.0%
4667269 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.77 63.0 5.07e-01 94.8% 46.4%
5001108 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.77 68.0 5.41e-01 95.7% 50.0%
5036201 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.76 68.0 5.41e-01 97.4% 50.5%
4943409 102.1.2.17 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH 0.76 61.0 4.98e-01 95.7% 47.4%
4963672 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.76 70.0 5.27e-01 99.1% 45.8%
5078090 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.75 67.0 5.40e-01 95.7% 51.9%
3306673 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.75 67.0 5.18e-01 95.7% 46.1%
4302932 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.75 69.0 5.38e-01 98.3% 49.8%
5048400 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.75 67.0 5.30e-01 95.7% 49.8%
5032883 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.75 67.0 5.28e-01 96.6% 49.1%
3728475 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.75 67.0 5.24e-01 95.7% 55.6%
4950713 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.75 66.0 5.26e-01 95.7% 49.8%
4994571 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.74 65.0 5.24e-01 95.7% 51.8%
3187468 102.1.2.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.73 62.0 5.61e-01 90.5% 68.0%
5010691 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.73 66.0 5.17e-01 99.1% 48.1%
4032194 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.73 64.0 5.23e-01 95.7% 52.9%
2875755 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.73 63.0 4.98e-01 94.8% 46.4%
4012199 102.1.2.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.72 67.0 5.26e-01 98.3% 60.9%
4934680 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.72 65.0 5.24e-01 99.1% 54.1%
4984110 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.71 64.0 5.13e-01 98.3% 51.6%
4957426 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.70 59.0 4.91e-01 95.7% 53.0%
3865238 102.1.1.16 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 0.61 40.0 4.46e-01 70.7% 86.7%
3259 3009.1.1.1 alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › DSBA 0.58 35.0 3.60e-01 98.3% 61.1%
4966142 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.58 39.0 4.30e-01 99.1% 88.9%
4969305 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 47.0 3.36e-01 97.4% 31.1%
3986322 4270.1.1.0 alpha bundles › N-terminal domain of Hypothetical protein MPN330 › N-terminal domain of Hypothetical protein MPN330 › N-terminal domain of Hypothetical protein MPN330 0.53 35.0 4.14e-01 70.7% 100.0%
4949024 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.52 40.0 3.12e-01 82.8% 64.8%