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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00384
Bact-VirSR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00384
Identity
- Kingdom:
- phage
Quality
86.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-93
Domain cluster:
representative
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jb7A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.72 | 49.0 | 4.31e-01 | 70.0% | 67.2% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 48.0 | 5.08e-01 | 83.7% | 77.8% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.69 | 59.0 | 5.48e-01 | 100.0% | 74.0% |
| 3u4vA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 49.0 | 4.33e-01 | 75.0% | 90.5% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 45.0 | 4.96e-01 | 78.8% | 93.5% |
| 3ml4C01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 52.0 | 4.76e-01 | 95.0% | 90.7% |
| 4wsqB00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.61 | 45.0 | 3.01e-01 | 77.5% | 29.4% |
| 5h9kA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.61 | 47.0 | 3.82e-01 | 83.7% | 66.9% |
| 6psyA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.61 | 44.0 | 3.21e-01 | 77.5% | 77.1% |
| 4kujA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 48.0 | 3.99e-01 | 88.7% | 92.7% |
| 1xfsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 52.0 | 4.21e-01 | 96.2% | 83.8% |
| 3f7wA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 46.0 | 4.41e-01 | 81.2% | 94.5% |
| 1txqA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.60 | 48.0 | 5.02e-01 | 86.3% | 100.0% |
| 1gutA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.59 | 38.0 | 4.13e-01 | 75.0% | 77.6% |
| 5hk0B00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 49.0 | 4.41e-01 | 88.7% | 82.2% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 47.0 | 4.81e-01 | 88.7% | 88.3% |
| 2kcdA00 | 3.10.450.250 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor | 0.59 | 40.0 | 3.52e-01 | 70.0% | 54.2% |
| 3s5wA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 47.0 | 3.00e-01 | 88.7% | 92.0% |
| 5ighA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 43.0 | 4.24e-01 | 78.8% | 95.5% |
| 3qz4A00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.58 | 42.0 | 2.90e-01 | 78.8% | 33.7% |
| 3c96A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 46.0 | 3.65e-01 | 87.5% | 90.5% |
| 4c0fC00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.57 | 40.0 | 3.59e-01 | 77.5% | 52.7% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.56 | 46.0 | 3.99e-01 | 93.8% | 77.2% |
| 3dzmB00 | 2.40.160.70 | Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. | 0.56 | 48.0 | 3.63e-01 | 96.2% | 67.6% |
| 2x5gA00 | 3.30.720.60 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.56 | 38.0 | 3.67e-01 | 70.0% | 61.5% |
| 3a0oA03 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 40.0 | 2.83e-01 | 77.5% | 86.5% |
| 4hj1A01 | 2.60.98.50 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › | 0.56 | 43.0 | 3.44e-01 | 83.7% | 74.7% |
| 3oxhA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.56 | 36.0 | 3.04e-01 | 76.2% | 38.0% |
| 2wtzA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.56 | 41.0 | 2.95e-01 | 78.8% | 93.6% |
| 6cxhA03 | 2.60.40.1580 | Mainly Beta › Sandwich › Immunoglobulin-like › Particulate methane monooxygenase, b subunit. Chain: A, domain 3 | 0.55 | 39.0 | 3.26e-01 | 75.0% | 93.4% |
| 1ci3M02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.54 | 36.0 | 4.14e-01 | 70.0% | 94.8% |
| 6aqgA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 44.0 | 3.64e-01 | 87.5% | 92.9% |
| 4fdaA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 46.0 | 3.36e-01 | 100.0% | 82.7% |
| 3l8kA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 44.0 | 3.78e-01 | 88.7% | 94.4% |
| 2wweA01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.53 | 38.0 | 3.57e-01 | 78.8% | 59.6% |
| 1ykdB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 44.0 | 3.37e-01 | 91.3% | 76.5% |
| 3nixB00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 46.0 | 2.95e-01 | 98.8% | 82.2% |
| 3qnfC01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.53 | 40.0 | 3.01e-01 | 81.2% | 95.6% |
| 3fssA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 45.0 | 4.41e-01 | 96.2% | 90.7% |
| 3ic9A03 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 43.0 | 3.71e-01 | 88.7% | 99.2% |
| 5umsA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 43.0 | 4.06e-01 | 95.0% | 95.1% |
| 4it1B01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 37.0 | 3.08e-01 | 76.2% | 57.5% |
| 3pcrA01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.51 | 35.0 | 3.40e-01 | 71.2% | 92.6% |
| 2czoA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 39.0 | 3.38e-01 | 83.7% | 63.8% |
| 3eb7A03 | 2.100.10.10 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain | 0.50 | 40.0 | 3.04e-01 | 87.5% | 96.4% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3959531 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 56.0 | 5.97e-01 | 87.5% | 90.0% |
| 3166879 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.71 | 54.0 | 5.88e-01 | 86.3% | 100.0% |
| 3737837 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 53.0 | 5.82e-01 | 81.2% | 100.0% |
| 4159881 | 220.1.1.197 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28623 | 0.69 | 58.0 | 5.50e-01 | 92.5% | 95.8% |
| 3411042 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.69 | 48.0 | 5.48e-01 | 82.5% | 96.7% |
| 5031165 | 4.1.1.93 ↗ | beta barrels › SH3 › SH3 › SH3 › 40S_S4_C | 0.68 | 49.0 | 5.23e-01 | 88.7% | 88.6% |
| 4021395 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.67 | 50.0 | 3.29e-01 | 78.8% | 24.0% |
| 3928430 | 4.1.1.223 ↗ | beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st | 0.67 | 51.0 | 5.34e-01 | 100.0% | 94.3% |
| 3636503 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.66 | 52.0 | 5.52e-01 | 87.5% | 97.1% |
| 3827585 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.66 | 45.0 | 4.10e-01 | 70.0% | 89.5% |
| 3811669 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.65 | 45.0 | 4.04e-01 | 71.2% | 84.5% |
| 3613601 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.65 | 47.0 | 3.19e-01 | 76.2% | 58.1% |
| 4966092 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.64 | 39.0 | 3.34e-01 | 75.0% | 38.7% |
| 3942573 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 43.0 | 4.94e-01 | 82.5% | 96.6% |
| 3347865 | 220.1.1.78 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 | 0.64 | 54.0 | 4.79e-01 | 96.2% | 82.5% |
| 3589473 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.64 | 46.0 | 4.66e-01 | 76.2% | 85.0% |
| 3967128 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.63 | 40.0 | 4.26e-01 | 76.2% | 72.9% |
| 4029263 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.63 | 51.0 | 4.45e-01 | 87.5% | 65.8% |
| 3301015 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 47.0 | 5.13e-01 | 92.5% | 100.0% |
| 4022780 | 243.18.1.0 ↗ | a+b two layers › Cystatin-like › Maltokinase N-terminal domain › Maltokinase N-terminal domain | 0.62 | 44.0 | 4.13e-01 | 75.0% | 91.3% |
| 3783321 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.62 | 45.0 | 3.71e-01 | 76.2% | 81.4% |
| 3230943 | 2003.1.2.65 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like, Pyr_redox_3 | 0.61 | 49.0 | 2.99e-01 | 87.5% | 79.8% |
| 3940934 | 4023.1.1.0 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core | 0.61 | 38.0 | 3.60e-01 | 72.5% | 52.6% |
| 3470175 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.61 | 49.0 | 4.97e-01 | 87.5% | 95.0% |
| 4289288 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.60 | 46.0 | 3.92e-01 | 81.2% | 53.9% |
| 3587789 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.60 | 37.0 | 3.44e-01 | 71.2% | 47.6% |
| 1513837 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.60 | 37.0 | 4.27e-01 | 70.0% | 85.0% |
| 3814814 | 2003.1.2.6 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 | 0.60 | 47.0 | 3.13e-01 | 87.5% | 68.3% |
| 5044389 | 4.26.1.0 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 | 0.59 | 37.0 | 4.38e-01 | 70.0% | 100.0% |
| 3994731 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.59 | 42.0 | 3.20e-01 | 73.8% | 49.4% |
| 4311691 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.58 | 40.0 | 3.34e-01 | 70.0% | 44.4% |
| 4235194 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.58 | 39.0 | 3.30e-01 | 75.0% | 43.2% |
| 5017958 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.58 | 46.0 | 3.81e-01 | 88.7% | 82.0% |
| 3174353 | 5.1.4.573 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30151 | 0.57 | 43.0 | 2.74e-01 | 80.0% | 22.3% |
| 3788662 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.57 | 35.0 | 3.59e-01 | 72.5% | 62.5% |
| 185116 | 295.1.1.2 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › SsgA | 0.56 | 46.0 | 3.98e-01 | 93.8% | 76.6% |
| 4974630 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.56 | 39.0 | 3.66e-01 | 72.5% | 75.0% |
| 3062081 | 5.1.3.5 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN | 0.56 | 41.0 | 2.67e-01 | 80.0% | 30.5% |
| 396038 | 4221.1.1.2 ↗ | a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › PHA01746 | 0.56 | 38.0 | 3.67e-01 | 70.0% | 61.5% |
| 4049072 | 2.4.1.6 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal | 0.55 | 36.0 | 3.25e-01 | 75.0% | 47.3% |
| 4129953 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.54 | 36.0 | 3.93e-01 | 70.0% | 84.6% |
| 3928999 | 2003.1.2.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like | 0.54 | 48.0 | 3.16e-01 | 100.0% | 70.7% |
| 1270403 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.54 | 45.0 | 3.93e-01 | 92.5% | 96.8% |
| 4067945 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.53 | 40.0 | 3.73e-01 | 82.5% | 75.2% |
| 4211209 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.53 | 35.0 | 3.77e-01 | 70.0% | 83.1% |
| 4183857 | 325.1.7.30 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Peptidase_M23 | 0.53 | 32.0 | 3.27e-01 | 71.2% | 61.3% |
| 4033192 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 39.0 | 3.39e-01 | 82.5% | 50.0% |
| 3360687 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.52 | 37.0 | 2.93e-01 | 73.8% | 40.0% |
| 3263051 | 304.7.1.3 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Pro-kuma_activ | 0.51 | 34.0 | 2.81e-01 | 70.0% | 95.5% |
| 5033670 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.50 | 38.0 | 2.87e-01 | 82.5% | 83.2% |
| 4431607 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.50 | 37.0 | 3.49e-01 | 80.0% | 78.0% |