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SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00385
Bact-VirSR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00385
Identity
- Kingdom:
- phage
Quality
74.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-56
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wasA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.69 | 58.0 | 3.55e-01 | 98.2% | 26.2% |
| 1k1zA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 45.0 | 3.98e-01 | 71.4% | 78.2% |
| 1twfI01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.64 | 42.0 | 4.51e-01 | 87.5% | 82.6% |
| 2k4yA00 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.63 | 43.0 | 3.82e-01 | 73.2% | 69.8% |
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 43.0 | 4.23e-01 | 87.5% | 66.7% |
| 3kh8A02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.62 | 47.0 | 3.72e-01 | 87.5% | 92.5% |
| 8gq6A01 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.62 | 50.0 | 3.20e-01 | 98.2% | 17.5% |
| 1zylA01 | 3.30.200.70 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.62 | 53.0 | 4.94e-01 | 96.4% | 85.7% |
| 5mqrA01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.62 | 52.0 | 3.23e-01 | 100.0% | 81.2% |
| 1mhnA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 43.0 | 4.27e-01 | 85.7% | 72.9% |
| 2v1qA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 40.0 | 4.00e-01 | 71.4% | 90.0% |
| 1x0tA02 | 6.20.50.20 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.59 | 42.0 | 4.49e-01 | 82.1% | 100.0% |
| 4eqsA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 41.0 | 2.95e-01 | 85.7% | 24.7% |
| 6bogA02 | 2.30.30.930 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 41.0 | 4.06e-01 | 87.5% | 70.0% |
| 3wknF00 | 6.20.50.120 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.57 | 40.0 | 4.22e-01 | 76.8% | 91.3% |
| 3weoA01 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.57 | 46.0 | 3.16e-01 | 100.0% | 54.5% |
| 2k3dA00 | 3.10.450.130 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › folded 79 residue fragment of lin0334 like domains | 0.57 | 47.0 | 4.21e-01 | 100.0% | 65.5% |
| 1x6gA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 43.0 | 3.94e-01 | 87.5% | 65.4% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.56 | 42.0 | 4.48e-01 | 82.1% | 95.8% |
| 3p24A01 | 2.40.128.470 | Mainly Beta › Beta Barrel › Lipocalin › | 0.56 | 45.0 | 3.44e-01 | 98.2% | 81.0% |
| 1olzA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 44.0 | 2.69e-01 | 100.0% | 38.7% |
| 4dovA00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.55 | 39.0 | 3.02e-01 | 82.1% | 47.8% |
| 3b79A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.55 | 37.0 | 3.02e-01 | 73.2% | 37.6% |
| 7obmA01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.55 | 45.0 | 2.88e-01 | 100.0% | 29.6% |
| 4b08A01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 45.0 | 4.06e-01 | 96.4% | 76.5% |
| 3zuaA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 37.0 | 2.91e-01 | 71.4% | 31.3% |
| 2f3xA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 40.0 | 3.11e-01 | 85.7% | 79.7% |
| 3qcmA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 45.0 | 2.91e-01 | 98.2% | 39.5% |
| 3oa5A01 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.54 | 44.0 | 3.39e-01 | 92.9% | 57.6% |
| 1a15A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 39.0 | 3.71e-01 | 91.1% | 67.2% |
| 6e55A01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.53 | 42.0 | 3.92e-01 | 91.1% | 77.0% |
| 2k5fA01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.52 | 41.0 | 3.71e-01 | 91.1% | 83.1% |
| 1zkpC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.52 | 39.0 | 2.60e-01 | 83.9% | 59.6% |
| 1vjnA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.52 | 39.0 | 2.69e-01 | 82.1% | 44.8% |
| 4dwsA01 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.51 | 43.0 | 3.33e-01 | 92.9% | 56.1% |
| 1av5A00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.50 | 42.0 | 3.48e-01 | 100.0% | 90.3% |
| 2m7oA00 | 3.10.450.400 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 | 0.50 | 40.0 | 3.82e-01 | 100.0% | 78.6% |
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 36.0 | 3.45e-01 | 83.9% | 66.7% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3741447 | 5.1.4.42 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_4 | 0.69 | 55.0 | 3.46e-01 | 100.0% | 15.5% |
| 3955467 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.68 | 56.0 | 5.32e-01 | 96.4% | 98.6% |
| 3355992 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 46.0 | 4.96e-01 | 71.4% | 97.8% |
| 5030452 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 47.0 | 5.05e-01 | 83.9% | 95.6% |
| 3398464 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 45.0 | 4.57e-01 | 71.4% | 96.4% |
| 3763497 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.65 | 46.0 | 4.10e-01 | 73.2% | 82.7% |
| 4998329 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 42.0 | 4.24e-01 | 87.5% | 67.3% |
| 3803793 | 5.1.5.66 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 | 0.63 | 56.0 | 3.54e-01 | 100.0% | 23.7% |
| 3174058 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.63 | 47.0 | 4.22e-01 | 76.8% | 77.3% |
| 3669780 | 1.1.1.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N | 0.62 | 46.0 | 2.82e-01 | 83.9% | 37.4% |
| 3317030 | 4.1.1.366 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26738 | 0.62 | 45.0 | 4.45e-01 | 87.5% | 73.3% |
| 4974588 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.62 | 52.0 | 4.80e-01 | 96.4% | 78.7% |
| 3660244 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.62 | 45.0 | 4.18e-01 | 89.3% | 60.0% |
| 3520226 | 101.1.1.388 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › FLYWCH | 0.62 | 53.0 | 4.09e-01 | 100.0% | 46.9% |
| 3914746 | 4.1.1.128 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_4 | 0.61 | 43.0 | 4.06e-01 | 87.5% | 60.0% |
| 3507907 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.60 | 51.0 | 4.05e-01 | 100.0% | 50.4% |
| 3554160 | 5.1.4.18 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EPTP | 0.60 | 50.0 | 3.16e-01 | 100.0% | 16.7% |
| 3940017 | 5.1.3.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 | 0.60 | 53.0 | 3.36e-01 | 100.0% | 32.3% |
| 3250210 | 5.1.3.137 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_2, Kelch_KLHDC2_KLHL20_DRC7 | 0.60 | 53.0 | 3.26e-01 | 100.0% | 29.0% |
| 3714156 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 46.0 | 4.04e-01 | 89.3% | 56.5% |
| 3422087 | 4.1.1.282 ↗ | beta barrels › SH3 › SH3 › SH3 › GUB_WAK_bind | 0.59 | 41.0 | 3.65e-01 | 73.2% | 91.6% |
| 3517453 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.59 | 49.0 | 4.50e-01 | 100.0% | 72.5% |
| 3617111 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.58 | 47.0 | 4.06e-01 | 91.1% | 60.0% |
| 3682725 | 304.28.1.32 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › GUB_WAK_bind | 0.57 | 39.0 | 2.87e-01 | 73.2% | 98.8% |
| 3952480 | 4.1.1.292 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 | 0.57 | 40.0 | 4.26e-01 | 82.1% | 93.3% |
| 3878271 | 101.1.2.284 ↗ | alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd | 0.57 | 39.0 | 2.89e-01 | 73.2% | 28.4% |
| 158939 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.56 | 43.0 | 3.94e-01 | 87.5% | 65.4% |
| 4104915 | 4.1.1.245 ↗ | beta barrels › SH3 › SH3 › SH3 › SspH | 0.56 | 39.0 | 3.90e-01 | 75.0% | 70.0% |
| 3617175 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 43.0 | 4.34e-01 | 87.5% | 87.3% |
| 3997949 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.56 | 43.0 | 3.80e-01 | 91.1% | 64.4% |
| 3660002 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.55 | 42.0 | 3.11e-01 | 83.9% | 55.2% |
| 4678702 | 3304.1.1.2 ↗ | a+b two layers › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › SUS_N | 0.55 | 49.0 | 3.79e-01 | 100.0% | 68.0% |
| 5032454 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.55 | 44.0 | 3.41e-01 | 89.3% | 71.5% |
| 3593222 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 46.0 | 4.16e-01 | 98.2% | 75.6% |
| 4941936 | 4.1.1.493 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29241 | 0.54 | 44.0 | 3.82e-01 | 96.4% | 81.1% |
| 4680096 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.54 | 37.0 | 3.36e-01 | 73.2% | 63.7% |
| 3768346 | 4.1.1.226 ↗ | beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor | 0.54 | 42.0 | 3.93e-01 | 91.1% | 86.7% |
| 4064354 | 4.1.1.245 ↗ | beta barrels › SH3 › SH3 › SH3 › SspH | 0.53 | 39.0 | 3.89e-01 | 91.1% | 78.3% |
| 1394554 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.53 | 38.0 | 3.71e-01 | 87.5% | 70.3% |
| 3477037 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.52 | 40.0 | 3.85e-01 | 89.3% | 81.4% |
| 4001172 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.52 | 40.0 | 3.77e-01 | 87.5% | 75.7% |
| 3484007 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 39.0 | 3.72e-01 | 87.5% | 74.3% |
| 3195996 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.51 | 36.0 | 3.54e-01 | 100.0% | 67.7% |
| 3481726 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 39.0 | 3.85e-01 | 87.5% | 88.3% |
| 3520064 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.51 | 41.0 | 3.96e-01 | 98.2% | 85.7% |
| 3482868 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.51 | 39.0 | 3.95e-01 | 89.3% | 92.7% |